UFO06033.5prime Sequence
1084 bp (1003 high quality bases) assembled on 2009-07-27
> UFO06033.5prime
CAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTGAATTCGGT
CCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCTATAGTCTG
CGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACCCGACTTCC
GATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTATCACCCCAC
CTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTACTACGATGT
GGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAGCAGCAACG
AAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGTATCTCAAT
AGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTGCTAAGTGC
CACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAGCTTAATCT
TTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCTTCGCCTCA
CTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCACCCGAATA
CTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCACTTCGGGAG
TCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCTCCTCGTAT
CGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTGGGCTTTAT
GCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTGGCTGCAGA
TTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACTGGATCATT
CCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGATGAGGCCTT
TGTGATCATCGAGAAGCGGCCAAGGAGAACAAGTGGAGTGCCCAATGAAA
TCTACGAGCAGCTGGTGGACGAGGTGGCCGAAAAGAAGAGCAGGACGAGA
TGGCCGCCTCCCAACCAGCGGCCACTGTGTTCGATCTCCTGCGCTATCCG
AATCTTCGACGGAAACCCTGCTCATCTTCCTTCGATGGTTGTGAACGTGG
CGTTACTACGCTGTTCTGGAACACCAACAATCTG
UFO06033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orct-RB | 2154 | CG6331-RB | 307..1392 | 9..1084 | 5115 | 98.7 | Plus |
| Orct-RA | 2533 | CG6331-RA | 686..1771 | 9..1084 | 5115 | 98.7 | Plus |
| Orct2-RB | 2700 | CG13610-RB | 401..1235 | 8..842 | 1730 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24276945..24277970 | 9..1029 | 4880 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24273429..24274263 | 8..842 | 1730 | 80.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:42 has no hits.
UFO06033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:38 Download gff for
UFO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orct-RA | 681..1771 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:13 Download gff for
UFO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orct-RA | 681..1771 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:17 Download gff for
UFO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orct-RA | 681..1771 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:17 Download gff for
UFO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24276940..24278030 | 1..1084 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:13 Download gff for
UFO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20102662..20103752 | 1..1084 | 98 | | Plus |
