UFO06038.5prime Sequence
1109 bp (1021 high quality bases) assembled on 2009-07-27
> UFO06038.5prime
CAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGCCCGGGAAA
GCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGTATCATGAA
GCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAGCAGTCTGC
GAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGAATCCCATA
GATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAATGGTAATGG
AACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACAAAGTGTGA
CTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAAGAGCTCAG
CCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCTTGGAGCTC
TGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCTACTGCTCT
GCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGTATGGCATT
CGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACACAACGAAGG
CGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGTGCATATCT
CGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAATTGCAGAG
GGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTGGTTTGCCT
ACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTTGATGGGCG
CTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAAACTATGGTCC
TATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAAAAGAATCC
GCGGGAGCGTCGACCAAGCATAACTTTGGCGGACTAAAAAAAGGAGTTTT
GATGGAGGTGAGAGACGAGGACGTTTCCAGCTGGTGCATATCCTGATATC
TCACATACAGGATCTCCTGTACTTCCTTTGCGCGCCCACTCTCTGCTATG
AGTGATTTCCCGCGAACTCCTCGCGGTGCGCAACGCTTTGCTGAACGGTT
ATGGAAGTGGTGAATGAGATGTAAATGGGGTATGCTTGTTTCACACATGG
ATCATCCAT
UFO06038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdy-RE | 2309 | CG31991-RE | 363..1475 | 8..1105 | 4940 | 97.4 | Plus |
mdy-RC | 2337 | CG31991-RC | 391..1503 | 8..1105 | 4940 | 97.4 | Plus |
mdy-RB | 2017 | CG31991-RB | 71..1183 | 8..1105 | 4940 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16820122..16820475 | 8..361 | 1770 | 100 | Plus |
2L | 23513712 | 2L | 16825579..16825717 | 745..883 | 695 | 100 | Plus |
2L | 23513712 | 2L | 16820531..16820662 | 362..493 | 660 | 100 | Plus |
2L | 23513712 | 2L | 16825409..16825518 | 635..744 | 550 | 100 | Plus |
2L | 23513712 | 2L | 16820718..16820809 | 491..582 | 460 | 100 | Plus |
2L | 23513712 | 2L | 16825779..16825925 | 888..1025 | 310 | 91.8 | Plus |
2L | 23513712 | 2L | 16820878..16820931 | 583..636 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:13 has no hits.
UFO06038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:34 Download gff for
UFO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 60..1115 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:26 Download gff for
UFO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RA | 138..1193 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:09 Download gff for
UFO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 65..1120 | 1..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:09 Download gff for
UFO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16820116..16820475 | 1..361 | 99 | -> | Plus |
2L | 16820531..16820659 | 362..490 | 100 | -> | Plus |
2L | 16820718..16820809 | 491..582 | 100 | -> | Plus |
2L | 16820878..16820930 | 583..635 | 100 | -> | Plus |
2L | 16825410..16825518 | 636..744 | 100 | -> | Plus |
2L | 16825579..16825722 | 745..887 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:26 Download gff for
UFO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16825579..16825722 | 745..887 | 99 | -> | Plus |
arm_2L | 16820718..16820809 | 491..582 | 100 | -> | Plus |
arm_2L | 16820878..16820930 | 583..635 | 100 | -> | Plus |
arm_2L | 16825410..16825518 | 636..744 | 100 | -> | Plus |
arm_2L | 16820116..16820475 | 1..361 | 99 | -> | Plus |
arm_2L | 16820531..16820659 | 362..490 | 100 | -> | Plus |