UFO06039.5prime Sequence
1135 bp (1020 high quality bases) assembled on 2009-07-27
> UFO06039.5prime
CAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATCAGGAAGAA
ATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCCTACGATGA
CGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAATGGCCACG
CCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCCAAGAGGGA
GACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTGGCGGACAT
CAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGCACATCGGG
TTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCAACGGGGGC
CTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGTCCTAGACA
CAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGAGGATGCGC
GGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATGCTTCAGGC
GCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGACAATTCTA
CGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGAGCAACCCT
ACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGCACGCTCCG
CTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGACTGGTCCGG
ATCGGACTGCGACTTGTCTTGATATGTCTGCTGATCTTCATACTCGCCTT
GTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAGAGCATCCAC
ATCACAACCATAGTGCCCAGACAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAAT
AAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATCCAGATGGAGTTCT
GAGTCATTACTGGATTTATCAACAGAGTCAGCGAGCTCGATATTCAATTA
CGCCCGCCTGCCACTCATCGCAGTTACTGTTGTATTCATAGCAATTCTTG
CGACTGAGCCATCGAACGCATGATGACCTGAATCG
UFO06039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 1479 | CG17985-RA | 177..989 | 9..820 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7654478..7655037 | 582..23 | 2800 | 100 | Minus |
| 2R | 25286936 | 2R | 7652115..7652355 | 820..581 | 1155 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:36 has no hits.
UFO06039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:33 Download gff for
UFO06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 186..1003 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:17 Download gff for
UFO06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:35 Download gff for
UFO06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 9..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:35 Download gff for
UFO06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652110..7652353 | 583..828 | 97 | <- | Minus |
| 2R | 7654478..7655037 | 23..582 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:17 Download gff for
UFO06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3539615..3539858 | 583..828 | 97 | <- | Minus |
| arm_2R | 3541983..3542542 | 23..582 | 100 | <- | Minus |
