UFO06045.5prime Sequence
1122 bp (1007 high quality bases) assembled on 2009-07-27
> UFO06045.5prime
CAGTCGACATGGCGCGCGAGGACGAGGAACGCATCGTGGACAATGAGGAG
GTGTCGCGACCGACGGAGGAGGACCAAGTGGTCAGTCGGGCCGGTCGGCG
TGACAATGAACTGAGCCTTCCGTCCGGCGGCTGCTGCATGCCCTCGAGCA
CGAGCCACCGCTTCATGGCTCTGGTGTTCATGTGCCTGCTGGGATTCGGC
TCCTATTTCTGTTACGATGCACCCGGCGCCCTGCAGAACTATTTCAAGAA
AGATCTTAATCTGACCTCCGCCCAGTTCACACTCATCTACTCGATTTACT
CGTGGCCCAATGTCGTCCTGTGCTTCGTGGGAGGTTTCCTGATCGATCGA
CTGTTTGGCATTCGACTGGGCACGATTATCTACATGATGATCCTGCTGGT
GGGTCAGTTGATCTTTGCCTGCGGCGGCATTCTGGACGCCTTCTGGATGA
TGATCCTGGGACGGTTTATCTTCGGCATTGGCGCCGAATCACTGGCGGTG
GCCCAGAACAGCTATGCGGTGCTCTGGTTTAAGGGCAAGGAACTGAACAT
GGTATTCGGCCTGCAGCTGTCGGTTGCCCGATTCGGCAGCACCGTCAACT
TCTGGGTGATGCAGCCCATCTATGAGTATGTGAGCAATTTTTACAAGGGA
CATACCGCTCTAGGCGTCGTCTTATTGCTGGCTACCCTCACCTGTGTGAT
GTCGATGACCTGTGCCCTCATCCTCGGCTGGATGGACAAGAGGGCCGAGC
GGATTTTGCAGCGTAACAACAACCCGGCTGGACAGATACCGAAACTCACC
GATGTCTTTTCGTTCAAACCACCCTTTTGGATGGTATCCATCATTTGCGT
CGCCTACTATGTGGCCATCTTCCCATTCATTGCCCTCGGACAGAATTTCT
TTGTTGATCGCTTCGGCTTTCGCCTGCTGAGGCCAACACCGTGGACTCGC
TGGTGTATCTAATTGCAGCCGTATCGTCCTCGGTCTTTGGTTCATCATCG
ACAACTGGTAGAATGTGACCTGGGGTGTTCACAGCGGACACTGACCACCA
TGGAGCCATGCCTGCTACGTCACCAGCTGAACCCTATGTGGGCAGTGATA
TCATGGACTGTCGTATTCATGC
UFO06045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-RB | 2318 | CG8602-RB | 508..1635 | 2..1118 | 5155 | 98.1 | Plus |
| CG8602-RA | 2570 | CG8602-RA | 508..1635 | 2..1118 | 5155 | 98.1 | Plus |
| CG12194-RB | 2105 | CG12194-RB | 497..965 | 145..613 | 905 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7327283..7328335 | 1051..2 | 4855 | 98.7 | Minus |
| 2L | 23513712 | 2L | 4839579..4839991 | 201..613 | 850 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:37 has no hits.
UFO06045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:32 Download gff for
UFO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 523..1656 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:13 Download gff for
UFO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 507..1640 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:22 Download gff for
UFO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 507..1640 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:22 Download gff for
UFO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7327203..7328335 | 1..1122 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:13 Download gff for
UFO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7320303..7321435 | 1..1122 | 97 | | Minus |
