UFO06048.5prime Sequence
1076 bp (979 high quality bases) assembled on 2009-07-27
> UFO06048.5prime
CAGTCGACATGATGAGCCTGCTGGGGCGCACCGATGTGGATGCGGGCGAA
GTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTGGCCACCAG
TGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGACCCTGGACA
AGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGCGTCTGTTC
GAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGCAAGCTCAA
GGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTCGTATGCAA
ACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTGTGTGCCTG
GAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTGGTGCACAC
CATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCTCTCCTCGT
CGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTGCTGGCGAG
GTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATGATTCCCGC
CCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGGCACGGAGA
TAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCAGCTCCCAG
GATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGCTGTGTGTC
CATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGTGTCCAGCT
CCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTGCCACGGAA
ACAGCCGAAACCATGGCAGCAAGCAGTCGAGCGACGACTGGATGGGTTAC
TCGTTTTTTAGATTCTTAAGCAAAACGGTCACCAGCTACCTGCCCACGCA
GTGACCGACGTGTTTAGCCAAGGCCGTGCCTTCGCTCGGTCACTCTGCCG
GAGGCGGAGTGCGCAGATGTGCGCTATTGCCACGATACAAAAGCAGCTAG
ACTTTGATGCCTCGCAGGATGGGTTACTGTACGTGTATTCCAATCCCACG
TCGAGGGCGCTAGGCAAGCTAATAAG
UFO06048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg18a-RE | 2267 | CG7986-RE | 226..1304 | 8..1075 | 5000 | 98.3 | Plus |
| Atg18a-RG | 2235 | CG7986-RG | 364..1442 | 8..1075 | 5000 | 98.3 | Plus |
| Atg18a-RC | 2526 | CG7986-RC | 251..1329 | 8..1075 | 5000 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8187813..8188580 | 80..846 | 3775 | 99.7 | Plus |
| 3L | 28110227 | 3L | 8189286..8189443 | 846..999 | 590 | 97.5 | Plus |
| 3L | 28110227 | 3L | 8187505..8187576 | 8..79 | 345 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:42:54 has no hits.
UFO06048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:36 Download gff for
UFO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18-RC | 238..1323 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:23 Download gff for
UFO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18-RB | 504..1589 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:43 Download gff for
UFO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18a-RC | 244..1329 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:43 Download gff for
UFO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8189287..8189445 | 847..1000 | 96 | -> | Plus |
| 3L | 8187498..8187576 | 1..79 | 93 | -> | Plus |
| 3L | 8187813..8188580 | 80..846 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:23 Download gff for
UFO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8180598..8180676 | 1..79 | 93 | -> | Plus |
| arm_3L | 8180913..8181680 | 80..846 | 99 | -> | Plus |
| arm_3L | 8182387..8182545 | 847..1000 | 96 | -> | Plus |
