UFO06050.5prime Sequence
1125 bp (1003 high quality bases) assembled on 2009-07-27
> UFO06050.5prime
CAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGGAGGAGCAG
CCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACCAACTTGCC
TGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCATTTACGCCT
TTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACCAGGATGAG
CAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTGAATGTGCT
CTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAATAACAGGTC
TGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGGATGCCGCG
CAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTTTGCCTGGT
GGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCAGGCATTTG
AGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTGACTCACTG
CGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACCAGTCAGTT
GAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAAACCCAAAC
AGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGAACATCGAT
TGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTAAAGCCTAC
AGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGAGGATGACT
TGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTAGGTCACGA
CGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGCTATCCCCC
CCGCGGAGTTTATAATTTGGAAAGTCTCTACACGAGAATATTTAAGATAC
CAGCACTTAGTGCTCACAGGCAGAGGCTGATGTAGTCATGACACAAAACT
GATACAGCATTACGGCATTGATTTCCTACTCGCGAGAGCAGCATTCATTC
AGCAGTGTGCACTGCTCTCTGTTGTCGAAAAAAGACGCATCGTAGCTTCT
AGAACATCGTTGGCGCCGGGACCAGGTTATGGTCATATCATAATCTAATC
TATTCTCAACTAGCCTAGGAATCTG
UFO06050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-RB | 1221 | CG3165-RB | 121..1091 | 9..977 | 4805 | 99.8 | Plus |
| CG3165-RA | 1323 | CG3165-RA | 121..1091 | 9..977 | 4805 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2977585..2978268 | 296..977 | 3320 | 99.7 | Plus |
| 2L | 23513712 | 2L | 2977242..2977532 | 9..299 | 1455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G2 | 3102 | G2 G2 3102bp | 420..468 | 6..53 | 125 | 75.5 | Plus |
UFO06050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:29 Download gff for
UFO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 116..1086 | 9..977 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:24 Download gff for
UFO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1091 | 9..977 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:38 Download gff for
UFO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1091 | 9..977 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:38 Download gff for
UFO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2977242..2977530 | 9..297 | 100 | -> | Plus |
| 2L | 2977587..2978268 | 298..977 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:24 Download gff for
UFO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2977242..2977530 | 9..297 | 100 | -> | Plus |
| arm_2L | 2977587..2978268 | 298..977 | 99 | == | Plus |
