UFO06051.5prime Sequence
1123 bp (1000 high quality bases) assembled on 2009-07-27
> UFO06051.5prime
CAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCCGGCTGAAC
AAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATCGATCGCAA
TGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCGCAAATTCG
ACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCAACGTGGAT
CAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTACGACGATGT
GAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGTTCTCAAGG
CTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGCGCTTCCCC
GAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTTTATGTGCC
CATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGTGACCACGC
TCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCCAGGAAGCT
CTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGAGTTGGGGA
CCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAAGCCGTTGT
TCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGTTGCAGAAG
GAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCAGTGGAGCG
TCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAAGCCGGCGA
GAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACACCGGTGGT
GCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGCGACAAGTG
TGGAGCGGCTGCTGTCGCTGGATTCATGCAGTGTCAGTCAACTGCAACCG
GATGATATCCATGTTGTGGCTGCCCTGTGCATGGTGCGCAATTCCGTGGG
CGAGGAGTGCTACGTGGCCGATGAGGTTATCACCCTCGCGAGCTGGTCTT
CATGTGGAGGATGGAAATACTGATGCCGAGGTCGCATGGTGCATGACCGA
TGCCTGTGCGCATGAAGGATTGGTCGTGGAGCAAATTCTCCGGGATCCCA
CTTCCCATGCCACCTGAGCGTGT
UFO06051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip-B-RD | 1813 | CG9285-RD | 63..1157 | 8..1098 | 5195 | 98.8 | Plus |
| Dip-B-RB | 1938 | CG9285-RB | 188..1282 | 8..1098 | 5195 | 98.8 | Plus |
| Dip-B-RC | 2047 | CG9285-RC | 297..1391 | 8..1098 | 5195 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13784316..13785020 | 398..1098 | 3050 | 97.7 | Plus |
| 3R | 32079331 | 3R | 13783817..13784094 | 23..300 | 1390 | 100 | Plus |
| 3R | 32079331 | 3R | 13784159..13784259 | 298..398 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:29 has no hits.
UFO06051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:28 Download gff for
UFO06051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-B-RB | 181..1289 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:10 Download gff for
UFO06051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-B-RA | 275..1383 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:10 Download gff for
UFO06051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-B-RC | 290..1398 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:10 Download gff for
UFO06051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13783817..13784093 | 23..299 | 100 | -> | Plus |
| 3R | 13784161..13784259 | 300..398 | 100 | -> | Plus |
| 3R | 13784317..13785027 | 399..1103 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:10 Download gff for
UFO06051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9609539..9609815 | 23..299 | 100 | -> | Plus |
| arm_3R | 9609883..9609981 | 300..398 | 100 | -> | Plus |
| arm_3R | 9610039..9610749 | 399..1103 | 97 | | Plus |
