UFO06058.5prime Sequence
1110 bp (1010 high quality bases) assembled on 2009-07-27
> UFO06058.5prime
CAGTCGACATGCCTGCCGAAAACTTGGAGGAGCAGGGTCTGGAGAAGAAC
CCGAACCTGGAGCTGGCCCAGACGAAGTTCCTGCTTACCCTGGCGGAATA
CAAGCAGGATGCGGCATTGAAGGCGAAGCTTCTGGAGGCGATTCGCACGG
AGAATATGGCCCCGTGGTACGAGCACATCTGCTCGGAACTCGGCTGGACC
GTAGACAAGGATCTGCTGGCGCGAATGAAGGAGAACAACCGCGTAGAGGT
GGAGCAGCTAGATGCGGCAATCGAGGATGCGGAGAAGAATCTGGGCGAGA
TGGAAGTGCGCGAGGCGAATCTTAAGAAGTCAGAGTACTTGTGCCGCATC
GGCGACAAGGCTGCCGCAGAGACTGCCTTCCGCAAGACCTACGAGAAGAC
CGTTTCCCTGGGTCACCGCCTGGACATCGTGTTCCATCTGATCCGCTTGG
GACTGTTTTACCTTGACCACGATCTCATCACTCGCAACATCGACAAGGCC
AAGTATCTGATCGAGGAAGGCGGCGATTGGGACCGACGCAACCGGTTGAA
GGTCTACCAGGGTGTTTACTCGGTGGCGGTGCGTGACTTCAAGGCGGCGG
CCACGTTCTTCCTGGACACCGTAAGCACCTTCACCTCATACGAACTGATG
GACTACCCCACCTTCGTGCGTTACACCGTTTACGTGGCCATGATTGCCCT
GCCGCGCAATGAGCTGCGCGACAAAGTGATCAAGGGCTCCGAAATCCAGG
AGGTGCTCCATGGCCTGCCCGACGTGAAACAGTTCCTGTTTTCCTTGTAC
AACTGCCAATATGAGAACTTCTACGTACACCTGGCCGGCGTAGAGAAGCA
ATTGCGCTTGGACTACCTCATTCATCCCCACTACCGCTACTACGTGCGCG
AGATGCGCATTCTGGGCTACACCCAGTTGCTGGAGTCGTATCGCTCCCTC
ACCCTGCAGTATATGGCCGAGTCGTTCGGCGTAACAGTGGAATACATTGA
ACAGGAGCTGGCACGCTTCATCGCCGCCGGACGCTGCATGCCAAGGTGGA
TCGCGTTGGCGGCATGTTGGGAAAACCATCGACTGACACAAGACTGGGCA
GGTACAGCAC
UFO06058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1393 | CG5378-RA | 133..1190 | 9..1065 | 5250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22460865..22461922 | 1065..9 | 5225 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:47 has no hits.
UFO06058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:31 Download gff for
UFO06058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 129..1197 | 9..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:54 Download gff for
UFO06058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1201 | 9..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:56 Download gff for
UFO06058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1201 | 9..1078 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:56 Download gff for
UFO06058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22460854..22461922 | 9..1078 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:54 Download gff for
UFO06058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18286576..18287644 | 9..1078 | 99 | | Minus |
