UFO06060.5prime Sequence
1090 bp (971 high quality bases) assembled on 2009-07-27
> UFO06060.5prime
CAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTTTGTTAACT
TTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACTCCTTGTGG
GATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGCCGAGCCAA
ATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTCAATGCGGT
GGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCATTGCTTGGT
AAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACATAAATGAGC
CCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATGACTTCATT
GCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCGGAGAGTAT
CGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGATCCGGCTC
TCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTGGCTGGGGA
AATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTATCTTCTACA
CTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCTCAATTCAA
GACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAGGCGATTCT
GGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAAAGTTATGA
GGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCGTGGAGTAG
GAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCATCGACAATA
GCTAGAAATGACTACCTACCAATCGGCGTGTCCGGGGGAGACATTGCCAT
GGGGCAATCCATTGCTCCTGACGCTAATCGGCACTGGACTCCTGCGGCTT
CACACACTTCCTTCGATGTTGTACATAGCTGCAGTCAGGATATCGCGGCA
CGATCGCGCAGCTAAGAATTATGGACTGTCTATGCCGTGGCGTATAATAA
CGATCATGATCATCGCTGCTGCACGAACCTGCCACAGTGCGCTATTTTAT
ACGGTGTTCGTATGCTCGAAGAATAGGCGCCAATCACCAA
UFO06060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10764-RA | 1700 | CG10764-RA | 24..1119 | 9..1086 | 4810 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17454224..17454789 | 409..970 | 2590 | 98.4 | Plus |
| 2R | 25286936 | 2R | 17453422..17453635 | 9..222 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 17454029..17454174 | 266..411 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 17453896..17453953 | 220..277 | 245 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:31 has no hits.
UFO06060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:30 Download gff for
UFO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10764-RA | 1..1049 | 6..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:05 Download gff for
UFO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10764-RA | 21..1069 | 6..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:31 Download gff for
UFO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10764-RA | 21..1069 | 6..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:31 Download gff for
UFO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17454029..17454174 | 266..411 | 100 | -> | Plus |
| 2R | 17453419..17453632 | 6..219 | 99 | -> | Plus |
| 2R | 17453896..17453941 | 220..265 | 100 | -> | Plus |
| 2R | 17454227..17454832 | 412..1005 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:05 Download gff for
UFO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13340924..13341137 | 6..219 | 99 | -> | Plus |
| arm_2R | 13341401..13341446 | 220..265 | 100 | -> | Plus |
| arm_2R | 13341534..13341679 | 266..411 | 100 | -> | Plus |
| arm_2R | 13341732..13342337 | 412..1005 | 97 | -> | Plus |
