UFO06061.5prime Sequence
1096 bp (998 high quality bases) assembled on 2009-07-27
> UFO06061.5prime
CAGTCGACATGCCGCTCTTCACTAGAAAATCACCCAAGCAAGGACCCACC
TCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAACTCCGGGTC
CTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCATTCCGGAGA
AAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACGGCAGTCCC
ACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTACCAGAAGAT
TGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTGCACCCTCA
ACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGATCGGGCTG
GACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAGATCGAGAT
TGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAACGGGGCCG
GCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCGATCGCATC
GAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGCCAGAATAT
GGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGACATTGCCA
CCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAAGCGGCTTC
CAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCGGCCGGAGG
AAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGCCAATGGCA
ATGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCGGTATCGAG
GCCATTAATAACCTGCTGGAGTCCTTCATGGGCATCAACGACACGGAGCT
GGCGTCCCAGATCTGGGACTTGGCGACCAAAAGTCCAACTCAATGGACTT
CGCGAGGCCATCGACACTCGGACCTAGAGTCGTTCGGCTTCACGGATGAC
TTCATCATCGAGCTGTGGGTGCATACGATGCCCGGCGCAGTCACGACAGT
CCAAGCAAGCTTTCTAGACATCGTTGGCCGCGGGGCCAGGTATTGTCTAT
CCTATCATAATCCTAATCCTAATTCACTAGCTAGGATCTGTCATGA
UFO06061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1299 | 8..1002 | 4760 | 98.9 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1360 | 8..1002 | 4760 | 98.9 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1244 | 8..1002 | 4760 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147320..8148284 | 969..8 | 4660 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:37 has no hits.
UFO06061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:25 Download gff for
UFO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 198..1217 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:41 Download gff for
UFO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1251 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:59 Download gff for
UFO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1251 | 1..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:59 Download gff for
UFO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147295..8148292 | 1..990 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:41 Download gff for
UFO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034800..4035797 | 1..990 | 98 | | Minus |
