UFO06065.5prime Sequence
1116 bp (1018 high quality bases) assembled on 2009-07-27
> UFO06065.5prime
CAGTCGTCATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCCAACCGCTT
AAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTTCAGGTTCC
CGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCTGCGCGATA
ATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTAGATTGCCC
CAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGGCAGAGCGT
GGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGGACATACCT
CCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCATACGCGAAT
CGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAGTTGTGGAG
CGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCAAGAACTGC
TCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGGCAGTTTAC
GGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTCCTTCGGAG
ATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGGAGAGGAGT
TCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACTTGGCCGCA
CCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTGCCCGGAGT
GACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGGTGTCAATC
TGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAACGCTATCCG
GAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCGGACATCGG
AAGCGACGGCGATCTGCAGTTTCACAATATCTGGAGGGCACCGGTCATCA
ACTTGGACGCGGAGGGCGGTGTGTGCGCATCACCACAGCATTCGCAGCGC
GACAGCCACTTTAGCGTGCCGGTGGAGCAGGTGCGTCCGTGTACGAGGCG
ATGGCCACCTTGTGGCCTGGCCACGAGCACTCTGCGATTCAGAACCACGC
CCGGCGACTGCTCGTTCGACATTTGGCTGGTTCCAGACGTACGGTACACA
AACGAACGCAAGGGCC
UFO06065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10814-RA | 1458 | CG10814-RA | 44..1118 | 9..1071 | 5055 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13376796..13377688 | 901..9 | 4465 | 100 | Minus |
| 2R | 25286936 | 2R | 13376383..13376496 | 1011..902 | 370 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:28 has no hits.
UFO06065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:24 Download gff for
UFO06065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10814-RA | 27..1106 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:02 Download gff for
UFO06065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10814-RA | 44..1123 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:30 Download gff for
UFO06065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10814-RA | 44..1123 | 9..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:30 Download gff for
UFO06065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13376310..13376496 | 902..1075 | 92 | <- | Minus |
| 2R | 13376796..13377688 | 9..901 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:02 Download gff for
UFO06065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9263815..9264001 | 902..1075 | 92 | <- | Minus |
| arm_2R | 9264301..9265193 | 9..901 | 100 | | Minus |
