UFO06066.5prime Sequence
1113 bp (1005 high quality bases) assembled on 2009-07-27
> UFO06066.5prime
CAGTCGACATGATCCGCCCCACTCTTATCGTAGTGCTCATCTCACTGGCC
AGTGTCGATTCCGGCCACAACTCACCCGTGACCACCATCCCGGTGGCCGA
GCCCATCAGCCAGGTGCCCCACGGCTTCCAACTCGGCCAAAACAATCACA
TCAGCAGCAGCAGCAACATTAGCCGGAGTGGAGGCGGAAATGGCCGTGAT
AAGAGAGGCGCCCAACTGGATCCCAGCGAGATTGCCCGCCAGAATCAGAT
AACCCAGCAGATATTCGCCAACTATTTGGAGCGTCGGTTGTTTCCCAATC
GCACGGCCAACCAAAAGATTCCCACCATCGCGGACATCCTGCCCAAGCCG
AAGCCATCGCCACGACCCCGTCCTCGAGGATTCGCGGCCAGCGATGGTGG
AAACTTCAAGAGGAGTGGAGGTGGAGCTCAAAGGAACCGCCTGGCAGCTG
CCGCCTCCAAGAGGCAGTCGGGCTACAATCGCAAGCGATTGCGGGAGGAA
CAGGAGGAGGAGGAGGAGGCCGACGACCAGGAGCGGGATCAGCAGCCGCT
GGCCAACCAGGAGGACTTCGATTACGACGTGCAGGAGTCGCTGCAGAGCG
TGGAGTCGGAGCAGCACGACCAGTACTATGGGAACATATTCCATCGCGAT
CCCAGCGAGAACGAAGTCGATAATGATTGCCCCAACTGCGTGGACGAGTC
GCAGTACACGCCGAACAAGTGGACGATGCCGCTGCTGAAGCTCGGGGAGA
AGCGCTACTACCTCGGCATCTTCTTCAAGGCAAACTGGTTCAAAGCCACA
CAATATTGCCGATACCACGGCATGCATCTGGCCAGCATTTCATCACAGGA
AGAGAACGATAGACTGGAGAAGCACATACGTGACTTTGGCCTGGCCACGA
ACATTTCTGGATTTCCGGCACGGACCTGGCCGACGAGGGCAACTTCTTCT
GGATGGCCACCGGCAGACCCATCACATTCACACTGGACGCGCGACCCAAC
ATTTCCGTACGAGACGGCGAGGAGGAACTGCCTAAGCTGTGACCGGATGC
AGGCCTCAGTGACGACTCGCGGCACTCGAACTACTTCGTCTGCAGGGTCA
GCAGCAAGCTTCT
UFO06066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9134-RB | 2138 | CG9134-RB | 713..1759 | 8..1041 | 4925 | 98.7 | Plus |
| CG9134-RC | 957 | CG9134-RC | 198..578 | 674..1041 | 1610 | 96.6 | Plus |
| CG9134-RA | 1254 | CG9134-RA | 495..875 | 674..1041 | 1610 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1261564..1262033 | 206..675 | 2350 | 100 | Plus |
| 3L | 28110227 | 3L | 1257161..1257361 | 8..208 | 990 | 99.5 | Plus |
| 3L | 28110227 | 3L | 1272963..1273074 | 778..889 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 1269070..1269175 | 675..780 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 1273959..1274047 | 893..981 | 445 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2470 | 104..168 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2373 | 134..173 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2610..2655 | 129..173 | 119 | 76.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..2514 | 134..167 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1575 | 133..173 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2374 | 141..177 | 113 | 78.4 | Plus |
UFO06066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:24 Download gff for
UFO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9134-RB | 703..1762 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:11 Download gff for
UFO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9134-RB | 706..1765 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:19 Download gff for
UFO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9134-RB | 706..1765 | 1..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:19 Download gff for
UFO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1257154..1257360 | 1..207 | 98 | -> | Plus |
| 3L | 1261566..1262033 | 208..675 | 100 | -> | Plus |
| 3L | 1269071..1269174 | 676..779 | 100 | -> | Plus |
| 3L | 1272965..1273073 | 780..888 | 100 | -> | Plus |
| 3L | 1273954..1274125 | 889..1045 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:11 Download gff for
UFO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1257154..1257360 | 1..207 | 98 | -> | Plus |
| arm_3L | 1261566..1262033 | 208..675 | 100 | -> | Plus |
| arm_3L | 1269071..1269174 | 676..779 | 100 | -> | Plus |
| arm_3L | 1272965..1273073 | 780..888 | 100 | -> | Plus |
| arm_3L | 1273954..1274125 | 889..1045 | 91 | | Plus |
