UFO06068.5prime Sequence
1108 bp (1025 high quality bases) assembled on 2009-07-27
> UFO06068.5prime
CAGTCGACATGGATTCTAAACGCGCGGCCCTTGAATCCGGCGACGGTCCG
GACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAAGCGTCGGG
GGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACCCTACACGG
GCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAACCGACTCCC
GCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTGGACAACGA
CGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACACTGCCAAGT
TGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACATTAAGGGCC
CTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACACCCGCTTC
CGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGCTCCCATGC
TGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCATTAGCGTG
GCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGATGTGGAGGC
CACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCACCTTCGGG
CGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCATTGATCCC
TGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACATCGGCCAT
AAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGTGCTGAAGC
GCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCACCTGACCAG
ACCATGGAAGCGTTCAAGGAGCTGGTCGACTCACCGCTGACAGCCGCACT
CTCACAGTCCGCTATCGGCGACTCCGGAAGCGCGCCGGGATGCCAATGGT
GCAGTGCGCCACCTCCTTTCAGCGCTGCAATCCCAAATGGAGACGACGAC
ACACTGACTGCAGGTCATATCTCCACCGCCGTTAGAGTCTATCATATTAG
CGACAGGCGATACTGCTCAGAATTCCAGTGGCAACCGGCAAGGAAGACGC
AGGCGCCAGAAGAAGAATAATGACGGAAGAAAGAATGAAGGCTCCAGCCG
TCAATGGC
UFO06068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pof-RC | 1683 | CG3691-RC | 122..1191 | 9..1073 | 5015 | 98.5 | Plus |
| Pof-RA | 1736 | CG3691-RA | 175..1244 | 9..1073 | 5015 | 98.5 | Plus |
| Pof-RB | 1959 | CG3691-RB | 126..1195 | 9..1073 | 5015 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24669902..24670694 | 286..1073 | 3390 | 97.7 | Plus |
| 2R | 25286936 | 2R | 24669571..24669847 | 9..285 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:06 has no hits.
UFO06068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:19 Download gff for
UFO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pof-RA | 156..1225 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:07 Download gff for
UFO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pof-RB | 126..1195 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:59 Download gff for
UFO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pof-RB | 126..1195 | 9..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:59 Download gff for
UFO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24669571..24669847 | 9..285 | 99 | -> | Plus |
| 2R | 24669902..24670694 | 286..1073 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:07 Download gff for
UFO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20557094..20557370 | 9..285 | 99 | -> | Plus |
| arm_2R | 20557425..20558217 | 286..1073 | 98 | | Plus |
