UFO06072.5prime Sequence
1100 bp (995 high quality bases) assembled on 2009-07-27
> UFO06072.5prime
CAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCTCCTCTCCG
CCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCGCAGAAGTC
AAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGATGCGGCCG
AGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGGGCACGCGC
AAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTGCTCCTTGA
GGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGTGGACGCCA
AGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCAAGCAGTTC
AATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAGGTGCAGTG
GCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAAGCATCCGA
AAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGGAGGAGATG
CAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCGAACACAAA
CGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGAAGACATGC
CGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACACGCTGCAG
ACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCTGGCGGAGA
CGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGCCCAGCGAC
GCAAGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGACAGAAACG
TCCGGCGAAACGGGGGAGGAGAACGAAAAGGGCGTATGCCCACCACGAAA
GCGGCGACAAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTCCGACGAGA
CGAGCCTCACCAACGCAGCTCCGAGCGCCACCCCAGTTGCAGACACAAAT
AGCAGTCCTTAGATTTGGTCGCGCACGAGATAGAGCAGAGTACAGCAGAC
TGTTTAGCTGCTCAGCAGCCCGTCTGACGAATTCGACTACGCCCGGCGGA
ACCGACGAGCTGCCTCCGAGCCGAATGGAACAGAGTAATGCTATACGCAG
UFO06072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3548-RA | 2218 | CG3548-RA | 102..1157 | 9..1049 | 4845 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24600461..24600980 | 347..866 | 2570 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24600048..24600387 | 9..348 | 1700 | 100 | Plus |
| 2R | 25286936 | 2R | 24601109..24601218 | 867..972 | 355 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:44 has no hits.
UFO06072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:26 Download gff for
UFO06072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3548-RA | 83..1148 | 9..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:18 Download gff for
UFO06072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3548-RA | 102..1167 | 9..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:30 Download gff for
UFO06072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3548-RA | 102..1167 | 9..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:30 Download gff for
UFO06072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24600048..24600385 | 9..346 | 100 | -> | Plus |
| 2R | 24600461..24600980 | 347..866 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:18 Download gff for
UFO06072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20487571..20487908 | 9..346 | 100 | -> | Plus |
| arm_2R | 20487984..20488503 | 347..866 | 99 | -> | Plus |
