UFO06076.5prime Sequence
1115 bp (1006 high quality bases) assembled on 2009-07-27
> UFO06076.5prime
CAGTCGACATGGCCAAGGTTATATCGCAGGACACCTTCGACGATGTTGTG
AAGGAGAACGTTGTGGAGTTCTCGATGACTCCTTCGGAGGCGAAAGAAGA
GACCATCAAGCAATTCGAGGCACAGGGCATCAACCTGGCCAACATTATCA
AGGACCTGTCCGTCAATCCGCAAACCGGCCAACCTGTCATCAACGAAACG
GTGGACAAGATCAAGGAGCACATTGGCCAAAAACTGGAGGAAACAACGGA
GCTGCTGGAACAGCTGGCCACCTTGGATGCTGAGTGCAAAAAGTCGCTAG
CCCATAGGGTTCTAGCCGGCAAAAATGGAGCCCACGATGCCCTGATCACC
CTGTTGGAGGAGACGCTCTCTGCTGAGTCACCCAACGAATCCGTGTTAAA
AAAGTCCTTGGAAGCCATCAACAGCCTGACCCACAAGCAGCCGGATCTGT
TTGATGCCGAGGCGATGGCCGTGGTTCTCAAGTTACTGGCCCTCAAAGTG
GAGAGTGAAGAAGTCACCCTGTTGACTCTTCAATGGCTGCAGAAGGCCTG
CATCATGCATGAAATGAACCGCCAGAATATCATGAATACCTCCGCACTCA
AACTCATGAAGCCCCTTTTAGGGAAAGGGAAGGACCGCCTGGTGCGTGAA
CTGACCGCCGTCTTCCGCTTCCTAGTGCTGGATGATGACATTCGCGTTGA
GTTTGGATGCGCCCACGAGCACGCCCGCCAAATAGCACGCGAGGTGCTCA
TCACCTTGGTGGAACTTTTGCCGGCCTATCAGATCCTAATGTTCTGGCTG
ATCTTCTGCTGACCATTGGAACACTGGCTGTGCGTCAGGAACTCTGTACA
GCTATCGACGAGGCTGGTGGACTGAAGTCCGTCTTCGAGATCATGAGTTC
GAATTTGGATGAGTGCGTCTAAATAGAGAGGCCTTAAGTTGCTACGTGCC
CTGACTGGCCAGACTCGTGAGTCACATATAGTACAGCAGGCGTGCTCTAT
AATAAAGCATGCTAGAGACGCCACAGTCATGAAAACATCGGTGCCGCGCT
TGGCTGGCGTGACTATCTCTGAACCTCCGAGTGCAGAACACATGCCGCCT
TTCGATCGGATCGCG
UFO06076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1601 | CG5721-RA | 100..1210 | 8..1102 | 4995 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18182948..18183821 | 990..123 | 4040 | 99.1 | Minus |
| 2R | 25286936 | 2R | 18183873..18183991 | 126..8 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:04 has no hits.
UFO06076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:15 Download gff for
UFO06076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 117..1239 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:44 Download gff for
UFO06076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 94..1216 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:40 Download gff for
UFO06076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 94..1216 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:40 Download gff for
UFO06076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18182820..18183818 | 126..1106 | 97 | <- | Minus |
| 2R | 18183874..18183997 | 1..125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:44 Download gff for
UFO06076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14070325..14071323 | 126..1106 | 97 | <- | Minus |
| arm_2R | 14071379..14071502 | 1..125 | 97 | | Minus |
