UFO06078.5prime Sequence
834 bp (118 high quality bases) assembled on 2009-07-27
> UFO06078.5prime
CAATCCACATGACTACCGCCTTGTATTTGCCCGAGGAGAACATTGATATG
ATTGCTGCCACCTCGGTGCTGCAGCAGCAGGCGGCGGACATCCGCACCAG
GACGATCAACTGGGCTTCCTACATGCAGTCGCAGATGATCAGCGAGGAGG
ACTACGAGGCAATCAACGCGTTGGACAAGTCACGTGCCATCTTCTTGGCC
CAGAACTCCAGCCAGGTGGTGAACACCCTGCTTAATCTGGTTTCGCATCT
GTCTAAGGACTCCACCGTTCAATACATCCTTGTGCTGCTCGACAATTTGC
TGCAGGAGGATCGCTCCCGTGTGGATCTATTCCATGACACAGCCGGCAAG
CTGAAGCAATGCATCTGGGGTCCGTTCCTGAACCTGCTGAACCGGCAGGA
TGGCTTTATTGTCAACATGTCGTCGCGCATCCTGTCCAAATTCGCCTGCT
GGGGCCATGAGACCGTGCCCAAGTCCGACCTGAACTTCTATCTGCAGTTC
CTGAAGGATCAGCTGGCCAGCAATAACAACGAATACATCCAGTCGGTGGC
CCGGTGCCTGCAGATGATGCTCCGTGTGGAAGAGTATCGATTTACCTTTG
TGAGATTCGACGGAATCAGCACTCTGATCCGTATCTTGTCGACCCGTGTC
ATCTTCCACGTGCAATACCAGTTGATCTTTTGCCTGTGGGTGCTGACCTT
CTGCCCCCTGCTGGACGCTGGATGAATAAGTTCGTAGTGATCCCCATCCT
GGCTGATATCCTCAGCGAATGTGCTAAGGAGAGGGTGACCTGATTATACA
TCGCGGTCTTCCCCACTCTGATAGAGAAGCCGGA
UFO06078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 161..987 | 9..834 | 3495 | 95 | Plus |
| VhaSFD-RD | 2247 | CG17332-RD | 161..987 | 9..834 | 3495 | 95 | Plus |
| VhaSFD-RA | 2154 | CG17332-RA | 161..987 | 9..834 | 3495 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16727010..16727489 | 524..45 | 2190 | 97.1 | Minus |
| 2L | 23513712 | 2L | 16724856..16724993 | 662..525 | 600 | 95.7 | Minus |
| 2L | 23513712 | 2L | 16724619..16724794 | 834..660 | 485 | 86.4 | Minus |
| 2L | 23513712 | 2L | 16727630..16727666 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:04 has no hits.
UFO06078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:13 Download gff for
UFO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RD | 152..985 | 1..833 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:59 Download gff for
UFO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 153..986 | 1..833 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:21 Download gff for
UFO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 153..986 | 1..833 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:21 Download gff for
UFO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16724859..16724993 | 525..659 | 95 | <- | Minus |
| 2L | 16727010..16727488 | 46..524 | 97 | <- | Minus |
| 2L | 16727630..16727670 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:59 Download gff for
UFO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16724859..16724993 | 525..659 | 95 | <- | Minus |
| arm_2L | 16727010..16727488 | 46..524 | 97 | <- | Minus |
| arm_2L | 16727630..16727670 | 1..45 | 91 | | Minus |
