UFO06082.5prime Sequence
1060 bp (960 high quality bases) assembled on 2009-07-27
> UFO06082.5prime
CTGTCGACATGATCACCTTAGCCCCTCTGATCGTCCTAGTCCTCGCTTGC
CTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTGATCCTGTC
CGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGAGCATACGA
TCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCTACACGCCC
TCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGCATGTATGC
GCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATGCTACGGAC
CGCACTGGCGGCGTGCCCTGGAGCCCCGGGCTTTGCCATACATCTTGCAG
CAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAATCAGTACTG
GGGCGCTGGGGATGTGCCAAAGGGTTGGAATAACTTCTACGGCCTTCACG
GGAACTCTAGATACTATAACTACACACTGCGCGAAAATACCGGCAACGTG
CACTACGAGTCGACCTACCTATCCGATCTGCTAAGAGATCGCGCCGCTGA
CTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGCGATGGTCG
CCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGACATGAGGGT
GTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAATCAAGTTAA
GCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCCCAACGAAA
CCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAACGCTGCTG
GCCGTGGACGAACTGGTCGTCACCTTGATGGGAGTGCTAAACGATACGCA
ATCGTTGGAGACACCTACATTATCTACACCTCGGATACGGCTACCATGTG
GGCAGTTTGCACAGCCCTTCGATAGAGACAGCCCTACGAACGATATACGT
ACGCTGCTAATCGGACTGCATAGCACCTGAAAGCCACATGAACTGCGTCA
GTCTATGACTGCACCGACTATATTGGCTTGGCCGAATCGAACACATCTAA
TGATGCATCA
UFO06082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-RA | 1683 | CG30059-RA | 76..1131 | 8..1040 | 4700 | 97.5 | Plus |
| CG18278-RA | 1677 | CG18278-RA | 70..1125 | 8..1040 | 4490 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13413790..13414489 | 710..11 | 3485 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13409063..13409762 | 710..11 | 3275 | 97.9 | Minus |
| 2R | 25286936 | 2R | 13408772..13409011 | 940..705 | 1000 | 98.3 | Minus |
| 2R | 25286936 | 2R | 13413499..13413738 | 940..705 | 1000 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:11 has no hits.
UFO06082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:16 Download gff for
UFO06082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 57..1122 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:03 Download gff for
UFO06082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 70..1135 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:25 Download gff for
UFO06082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 70..1135 | 1..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:25 Download gff for
UFO06082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13413466..13413737 | 706..965 | 95 | <- | Minus |
| 2R | 13413795..13414489 | 11..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:03 Download gff for
UFO06082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9300971..9301242 | 706..965 | 95 | <- | Minus |
| arm_2R | 9301300..9301994 | 11..705 | 100 | | Minus |
