UFO06083.5prime Sequence
1101 bp (970 high quality bases) assembled on 2009-07-27
> UFO06083.5prime
CAGTCGACATGGCGTCGCGCAGGCGCGCCGAACTGAATCCAAAACTGCAC
ATGGACAGGCAGCCGACAGCTGCCCGCATAACAGATCCCTCATTACCCGC
TGGAAAGCGACGCGAGATCGACAACGTGATGAAGAAGGCGCGCGCCAACA
CCACCAACGATTATTGGGACAAGAAGCTGATCGAGGCCGAGGAGAAGGAT
CCAAACCGATGGCGCCACACGGGCTACAAGAAGATGTACATCCAGGGGGA
GAGCAGCTCTGGAGAGAGCGAACGCGACGGTCGCGAAGGTCGTGAGGGTG
GAGCACCGCCCTACGGTCGTTATCCGCCCACAGGTGGACCGCCGCCAGGT
CCACCGCCTCCGTCGCAGCGTTACGGACGCTCTCGTTCGCCGCACTCGCG
CAGTCGGTCGCGTTTGCGCAAATCGCCACCGCTTTCACCACCTCCGCGTC
GTCGTTCACCGCCCATGGCTATGCACAGTGGCATGGATCGCCGTGGTGGA
CCTCGCTCGCCGCCAATGCCACGATCGCCCAACAATAGCCACGATGCCCT
CATGCGTCGACCCGGAAACGGCCACGGCGGAAGGCCCCGATCACCGCCGG
AACCCAGTGGTGGCTCGTCGTCCTCGTCGTTGCGACGCAAGCCAAACGCG
TCGCGTTCTCCGCTCGGACGTCGCCGGTCTCCACCGCTTCCTCCGCCCTC
GTCGTCGGCAATGGAGAAGCGAGGTCCAGTCGCCCATATCCTGCCGCGCT
CCAAGCGACCGCCATCGCCACCACCGAGGCACTCGATGCGTTCGCGATCA
AACAGCTCTATGAGCACCAGCTCCGATGATTCCTGCTCCCTCTGCTCACC
CAGTCATCGTCACAGATCTCGATCCCGCGGTCCGCGCTCGCCGCCACCCA
AGCCACGTGACCATTATCGTTCGGGGGCGCCTCCGCCCCCTCGTCGGAGT
CACATGGCCGTATCCATGGTCGCTACACTCACGTGTGCGCGGAGGTGGAG
CAGTTCGGTTTCCGGCCATGAGAAAGTTTCGCCCAGCGAGATGCGTCCAT
CGGCATGAACGTGTCGCCTCGATCGAACACCCACATGGAAGAGATTCCGC
C
UFO06083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-RA | 2972 | CG8929-RA | 790..1878 | 9..1087 | 4930 | 97.6 | Plus |
| CG8929-RB | 2499 | CG8929-RB | 317..1405 | 9..1087 | 4930 | 97.6 | Plus |
| CG8929-RC | 2231 | CG8929-RC | 125..1137 | 85..1087 | 4550 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20328324..20329021 | 82..779 | 3460 | 99.7 | Plus |
| 2R | 25286936 | 2R | 20329105..20329197 | 779..871 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 20329263..20329366 | 871..973 | 440 | 97.1 | Plus |
| 2R | 25286936 | 2R | 20328059..20328134 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:05 has no hits.
UFO06083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:16 Download gff for
UFO06083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RA | 787..1885 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:07 Download gff for
UFO06083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RB | 311..1409 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:41 Download gff for
UFO06083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RB | 311..1409 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:41 Download gff for
UFO06083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20328053..20328134 | 1..84 | 95 | -> | Plus |
| 2R | 20328327..20329021 | 85..779 | 99 | -> | Plus |
| 2R | 20329106..20329197 | 780..871 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:07 Download gff for
UFO06083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16215558..16215639 | 1..84 | 95 | -> | Plus |
| arm_2R | 16215832..16216526 | 85..779 | 99 | -> | Plus |
| arm_2R | 16216611..16216702 | 780..871 | 100 | -> | Plus |
