UFO06085.5prime Sequence
1005 bp (540 high quality bases) assembled on 2009-07-27
> UFO06085.5prime
CAATCCACATGGACCGGGCTAGTCTATATTTTATGAGCAAGGATGATAAA
AACACCTTCGACTTCGACGAGACCTTACCTTCGCTCCCGCTGCCAGAGCT
TATGGACACCATGGAGCGCTACTACAGCTGCATCCAGCCATTCGGGACCA
AGGAGGAGTTGGCCCAGGCTCGCAAGACTATTGATGAGTTCCAAAACGGA
GTGGGAGCCCAGCTGCACGAACAGCTCAAGAAGCGGGCGGCCGGCATGAG
GAACTGGCTGGGCACCTGGTGGGAGGACTACGGATATCACCTGATTCGGA
TGCCGCTGCTGCCCTACCAGCTCATGGTCATGCCCTCGCAATTGGAAATG
GTGGGCGTGCCGGAGACACCGGAGTACATGCTGAAGAGTCTGGCGCGCCA
CATTCACCACTCGCTGGAGTTTTGGGATCTGACTATAAAGTCCAGCATCA
AACCGCTCTCCTCGAACGGCGGTAAAATAAAGTACTCCTCCGCGCTGTAC
AAGCACTTCTTCTCCACGTGCCGTGTGCCAGGCGAGGAGCAGGATCATAT
AGAGAAGCATTTTCTCACCAAGGATGAGGGCAAAACGCCGAGTCACATGC
TTATTTCCGGCAAGGGACGTCAGTTCATCTTCGATTGTGTGCACGAGGAC
GACACTATCCTATCGGCTCCCGAAATCCTCGTGGCCCTGCAAAGAGTGCG
CAGCATCCTCGACTACGAGCCGTTGGGCGATTGTGTGCCCACCCTGAGCC
ATGACGATCGCTCCACGTGGGCACGCAACCGCAACCGTTTGAGGGAAATC
TCAGTTGCAAACACGATACGCTGCTTCTGGTGGAGAGCGCATGTATGGAT
ATCTGCTGGTACGAGCATCGCGCAAGGACTACGAGGTAGTCCTGCCAGCT
GGGTCTCTACGGTGATCTCCATTCCCGCTGGTCATACCGCACTGCAGCAT
CATCGTCGTCGCACGGACGCTGCACTGACTGGTGAGCACAGCTGCTACGA
TGGCA
UFO06085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 207..1210 | 8..1005 | 4585 | 97.6 | Plus |
| CG12428-RA | 2357 | CG12428-RA | 155..1158 | 8..1005 | 4585 | 97.6 | Plus |
| CG12428-RE | 2413 | CG12428-RE | 211..1214 | 8..1005 | 4585 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27704763..27705391 | 1005..383 | 2580 | 96.2 | Minus |
| 3R | 32079331 | 3R | 27705464..27705842 | 386..8 | 1835 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:58 has no hits.
UFO06085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:09 Download gff for
UFO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RA | 146..1157 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:54 Download gff for
UFO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 202..1213 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:16 Download gff for
UFO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 202..1213 | 1..1004 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:16 Download gff for
UFO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27705464..27705848 | 1..386 | 98 | | Minus |
| 3R | 27704764..27705387 | 387..1004 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:54 Download gff for
UFO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23530486..23531109 | 387..1004 | 96 | <- | Minus |
| arm_3R | 23531186..23531570 | 1..386 | 98 | | Minus |
