UFO06086.5prime Sequence
1113 bp (1000 high quality bases) assembled on 2009-07-27
> UFO06086.5prime
CAGTCGACATGCCAACGGGGGCCAGTTGTAAAGCCGGGGTCTGCGATTGC
GCCGATGGCCAGAACTATCTGCGTGGCAAGTGTCGCCCACTGAACGGACT
CGGCGAGTCCTGCGAAACGGACTTGGACTGCTACTTTGGCTACGATCGTG
CGTCTGTGAGTTGTCAGCAAAACGTGTGCGGCTGTGCAAATGGCTATTAT
AACAGATATGGAAACATCTGCCGTCGCAAATCAATGGAAGAAAACGATGC
CTGCGTCGTTAACGCGGACTGTGATGAACTGGGCGCCGGTGTCGAGTGCG
TTGGCCTAGTATGCACCTATGTGGACGAGATCACAACGACTCCGGGTGGC
GAGACCGAGGAAACGGAGACCACCAATCCGGGCTCGCCAGAGGATGATGA
TTCAACCACAGCCGAGGCGATCACCGAGACTGCCGATCCGGAACAGGAGA
CCGCTTTCAGTAGCCGAAGGCAGCTAACCAAGGCCTTTGTACACGCCCCC
CCGCCCACTCACAGCGATGCCGCCGCCCAGGTGTCCTTCGCCCAGCTCAC
CAATGGCGACACCGAGCCGCTCATCTCGCCCCGATCCCACGAGATTGCCG
TCCAGACGAGCATCGAGAAGTACGAGCTGAGGGAGGTGGGACGAAGTGTG
CGCAATGCGGCCACCGCCACCACCACAACGACAGCCACCGCCTCCACGAG
CACCAGTAGCAGGCGCAACTCCAGCCGCAACCAGAGACACGCCCATGGCC
AAAGACGCCGCTTGCCCGCCCTCTTCCGATTCGATGACGAGGATATAAAG
ACCTACTCCACGCTGGGTTCCAGCCGCGATGACGACGATGCCGATGAGAA
GAAGTATGGCAGCAGCTGCACGGATAATGGAAAGACATGCTCGGGTCTGC
CGCACTCGATTTGTTCCAAGAATATTTGCCTATGTCGCCAGGGTTACTAT
GCCCGCAATGGAAAATGTTTTGCCGAACTGGGGGAAATTGCGGAGAGCAC
GATGATGCGAGTACGAGTTCGATCAGTGACAAACTGCATGCCAAAGAATT
ATTTCTACGAGCGGATCTGGCCAATTGCGAAATCAATCAATACCACTTAT
CCTGCACCCCGAA
UFO06086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7381-RE | 2948 | CG7381-RE | 663..1780 | 9..1113 | 5205 | 98.3 | Plus |
| CG7381-RD | 3098 | CG7381-RD | 813..1930 | 9..1113 | 5205 | 98.3 | Plus |
| CG7381-RA | 2606 | CG7381-RA | 321..1438 | 9..1113 | 5205 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12969631..12970249 | 855..237 | 3095 | 100 | Minus |
| 3R | 32079331 | 3R | 12969421..12969540 | 975..856 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 12970323..12970441 | 237..119 | 580 | 99.2 | Minus |
| 3R | 32079331 | 3R | 12970510..12970621 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:45 has no hits.
UFO06086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:08 Download gff for
UFO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7381-RA | 313..1435 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:28 Download gff for
UFO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7381-RA | 314..1438 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:41 Download gff for
UFO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7381-RA | 314..1438 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:41 Download gff for
UFO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12969421..12969540 | 856..975 | 100 | <- | Minus |
| 3R | 12969631..12970248 | 238..855 | 100 | <- | Minus |
| 3R | 12970323..12970440 | 120..237 | 99 | <- | Minus |
| 3R | 12970511..12970628 | 1..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:28 Download gff for
UFO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8795143..8795262 | 856..975 | 100 | <- | Minus |
| arm_3R | 8795353..8795970 | 238..855 | 100 | <- | Minus |
| arm_3R | 8796045..8796162 | 120..237 | 99 | <- | Minus |
| arm_3R | 8796233..8796350 | 1..119 | 96 | | Minus |
