UFO06087.5prime Sequence
1129 bp (1018 high quality bases) assembled on 2009-07-27
> UFO06087.5prime
CAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGCTCCGGAAG
GGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAGGCACTTAC
GCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACATGGTGATGC
AAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGGATGGCGAC
GTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTGTTCCAGGA
GTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACCAGGAAGAG
ATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCCACTTGACA
CCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCAGTTTCCGG
CTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCAACAGGTGG
GGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAGTCAGCGAC
TTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAGCTGCCCAT
GGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGCGGATCTGT
ACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAGATGCTCTG
CTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTGTGTCAGGC
CTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCATGCCCTTTA
CCACTCCCCTAGCAGCCTGCTTCGATGGGTGGTCCTGGCGCCGTTGGTCT
CCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTGCGTGCTCTG
CAACAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCCAGTCAAGATCT
TATGCAGATCGTGAAATCCCTGCAGAGCTACTGCGCACGGCTGGCGAATC
AAAAACCGATCCCCAAGCGGATGCCGCAATATCAGAGTGCATGTACGCTT
CGCCCAAGCAGTGCAAATCGCCCTGGAGCTCCAACTGCATCACCAATCAG
AATCAGCTGCTGTGCCTCTTGGAATCTTAACCTCCCACCAAGCCTGATGA
AAATCGTCATAAAGCGCACAGAAGCAGCT
UFO06087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5274-RA | 1374 | CG5274-RA | 55..1168 | 9..1120 | 5235 | 98.5 | Plus |
| CG5274-RB | 1351 | CG5274-RB | 32..1145 | 9..1120 | 5235 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20426415..20427419 | 1111..108 | 4570 | 98.5 | Minus |
| 3L | 28110227 | 3L | 20427471..20427570 | 108..9 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:32 has no hits.
UFO06087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:07 Download gff for
UFO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5274-RA | 55..1177 | 9..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:10 Download gff for
UFO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5274-RB | 32..1154 | 9..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:45 Download gff for
UFO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5274-RB | 32..1154 | 9..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:45 Download gff for
UFO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20426395..20427418 | 109..1129 | 98 | <- | Minus |
| 3L | 20427471..20427570 | 9..108 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:10 Download gff for
UFO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20419495..20420518 | 109..1129 | 98 | <- | Minus |
| arm_3L | 20420571..20420670 | 9..108 | 99 | | Minus |
