UFO06088.5prime Sequence
1122 bp (1020 high quality bases) assembled on 2009-07-27
> UFO06088.5prime
CAGTCGACATGAAGCCCACTGTGATGGCGGCCAATCAGGCGCAAAGCAAT
CCCGCCACCGCCGCCGGTAATAATGTCTCACCCGGCGGTCCCGGTGTCAA
TATACCCGTAAACCGGGAGTACGTGAGTGGCGGCTACGGATCGCCACAGC
AGTCGGCACAGTTCCACACTCCCCAAAACGCTTACGGATCGCCCAGGCAG
CAGCAGCAGCACTTCCAGCAGCACCAGCAGGTTCCTCCAAATCAGCAGCA
GCAACATTTTCAGCCGACCTTTGGATTCGAACCGAACATGGACATGGACA
ACATGTTCCCGCGCTCGCACCTGGGCAGGATGCACGATCCCTTCGCCGGC
TTCGGCGACTCACACTTTGGTTTCCCCCGCTTCTCAACGATGGGCCGCCG
AGGTCGAATGGCCGGTGGGGCCAACACTCACATGGACCACGATGATGACT
TCTTTAATCGGCTGCCCTCGGAGTTCCGCCAGTATATCCCAGATGGTTTC
GGAGGCAGACGTGGTACCGGAGCTGCTCCTGCACCCGGACAAGTTCCACA
GCAGCAACAGCCGCAGCCACAGCCGCAGTACACCCAACAGCAACCCCAGA
CGCACTTCCAGTTCGGTGTGCCGCCCCAGCAACAGCCAGTCTATGCCGGA
CCAACCCAGCAGCAGGTGCCGCAGACGCCTTCAAAGCGCCTTTGCGATGC
TGCCATCCAGACGGAGGATCCTGCCGGTCGCTCGGAGGTTGATTGTGCCC
CGCCGACTAACTTGAACCAGCACGGACTGCGAAACACTGTCGACATGGGC
GTGAAGAGTGTCGCCGAGCAGGATCAGGACTGCGATCCCACTCCGCCCCT
CCGCCAGAGCAGCAGCAGCAGATCTGCAGTATCACCAGCAGCAGCAACAG
CATCAGCAACCGGGAGTACATAGCCAACCGTTTGGCACCCAGACAGTCCG
CCCGTTCAGGTCAGCAGTTCAGACCTACTATGCGCCGCACCAGCAGACGC
ATCCCAGCAAAGCAGAGACCCCGCCGCCAGCTCCACAGGACCCGGGTGGC
ACCTTTTGTGCCCACATTCCATCCTTTGTGTGGGGGGGGCGCTCCGAGCC
CATCACTCAATGCCCCAAGGAA
UFO06088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stv-RA | 3279 | CG32130-RA | 687..1805 | 8..1121 | 5120 | 98 | Plus |
| stv-RF | 3282 | CG32130-RF | 687..1808 | 8..1121 | 5080 | 97.7 | Plus |
| stv-RG | 2499 | CG32130-RG | 160..1025 | 261..1121 | 3855 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13481201..13481912 | 351..1054 | 3070 | 98 | Plus |
| 3L | 28110227 | 3L | 13478227..13478482 | 8..263 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 13481033..13481135 | 261..363 | 515 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6892 | 549..638 | 178 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6861 | 533..673 | 166 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6958 | 516..680 | 147 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6885 | 549..673 | 145 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6950 | 549..687 | 136 | 57.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1160 | 516..594 | 136 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2416 | 549..604 | 135 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2378 | 546..599 | 133 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2866 | 521..604 | 132 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1146 | 550..604 | 132 | 76.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2829 | 550..594 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6854 | 549..678 | 126 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6946 | 539..638 | 120 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1529..1584 | 539..594 | 118 | 67.9 | Plus |
UFO06088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:51 Download gff for
UFO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stv-RA | 671..1792 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:38 Download gff for
UFO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stv-RA | 683..1805 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:49 Download gff for
UFO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stv-RA | 683..1805 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:49 Download gff for
UFO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13478223..13478482 | 1..263 | 98 | -> | Plus |
| 3L | 13481036..13481135 | 264..363 | 100 | -> | Plus |
| 3L | 13481214..13481976 | 364..1122 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:38 Download gff for
UFO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13471323..13471582 | 1..263 | 98 | -> | Plus |
| arm_3L | 13474136..13474235 | 264..363 | 100 | -> | Plus |
| arm_3L | 13474314..13475076 | 364..1122 | 96 | | Plus |
