UFO06090.5prime Sequence
1114 bp (994 high quality bases) assembled on 2009-07-27
> UFO06090.5prime
CAGTCGTCATGAAAACGAGCACACCTCATCCACGGTCGATTTGGATACTT
ACAGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTCCCGTTTCC
ACCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCACCAGGAGT
TCGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCG
GGGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGAC
TTGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGC
TGGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACAC
AGTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCAT
CGCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTG
ATCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTT
TCCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCG
CACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCG
AATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAG
CACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGG
GGAGCGAACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCT
ACGCCGATCTGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAG
GACTCAGACCTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCT
GCCCGCTCTGGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGC
AGTCGTTGTACGAAACAAAGTAGCGCTCAAATTGCCCAGGTCAAGCAGAG
TTCCAAGTGAATTGTCTGAGTTTTCAGAAGCTGGGCATGTCAGGATGTTC
CTCCGATCAGGCTGAATTTGGAAAATGCTACAAGTCCGGAGCCATTGAAA
GTGTCAGCCATCATACCCAGCCTTCATTGAGTCCACAGAAGGACGGAGGC
TGCCGGCCGCCAAC
UFO06090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 524..1640 | 9..1112 | 5145 | 98.2 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 202..1274 | 53..1112 | 4925 | 98.1 | Plus |
| Spn42Da-RJ | 1490 | CG9453-RJ | 202..1274 | 53..1112 | 4925 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877435..6878404 | 974..9 | 4640 | 99.3 | Minus |
| 2R | 25286936 | 2R | 6877275..6877364 | 1066..979 | 260 | 91.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:07 has no hits.
UFO06090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:49 Download gff for
UFO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RL | 520..1608 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:03 Download gff for
UFO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1612 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:25 Download gff for
UFO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1612 | 9..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:25 Download gff for
UFO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877268..6877362 | 981..1071 | 92 | <- | Minus |
| 2R | 6877427..6878404 | 9..980 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:03 Download gff for
UFO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764773..2764867 | 981..1071 | 92 | <- | Minus |
| arm_2R | 2764932..2765909 | 9..980 | 99 | | Minus |
