UFO06092.5prime Sequence
1090 bp (989 high quality bases) assembled on 2009-07-27
> UFO06092.5prime
CAGTCGACATGGACTTCACGACCTTCGTTAAGCCCTCAAATGGCGGTGGC
GACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAGCTGCAGTT
CTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGAGGACGACT
ACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCTATTGGGGC
ACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAGCGCAAGTC
CATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGGCGGATTCG
CACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGTCGGCCATC
CAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGCGAGGCGGT
GGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTTCTTTGGCG
ACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGGTGGCCTCC
CTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAGAAGGCGGT
CAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATTCGGTTCCA
AGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCGTCGGCTTC
TTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAACTGGGCTG
GTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGGACGGCCCG
AGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCTCGCTCACC
ATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAGCTGCAGCAGTTCATA
CTGTCGTGCCAGGACACGGAGACCGGTGGCTTCTCGGACAGACTGGCAAC
ATGCCGGACATATTCCACCCCGCTGTTCGGCATCGGCGGACTCTCGCTAC
TGGACATTCCGGCCTGAAGCATCAACCACGCTCTGCATGCGCAGTACATC
ATCGACGCTGGCATCAAGCCGCACTATTGCCGAAGCAGCCAGCTTTCATA
AACAATCGTTTGGCTGCGGCCAGTTAGTGACATAAATCAA
UFO06092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaggt-II-RA | 1433 | CG18627-RA | 153..1188 | 9..1033 | 4860 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2879264..2879880 | 9..625 | 3070 | 99.8 | Plus |
| 2L | 23513712 | 2L | 2880043..2880432 | 624..1006 | 1560 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:26 has no hits.
UFO06092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:48 Download gff for
UFO06092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaggt-II-RA | 136..1181 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:27 Download gff for
UFO06092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaggt-II-RA | 148..1193 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:07 Download gff for
UFO06092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaggt-II-RA | 148..1193 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:07 Download gff for
UFO06092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2879259..2879879 | 1..624 | 99 | -> | Plus |
| 2L | 2880044..2880468 | 625..1041 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:27 Download gff for
UFO06092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2879259..2879879 | 1..624 | 99 | -> | Plus |
| arm_2L | 2880044..2880468 | 625..1041 | 96 | | Plus |
