UFO06096.5prime Sequence
1069 bp (990 high quality bases) assembled on 2009-07-27
> UFO06096.5prime
CAGTCGACATGCTAGAAGCTGTTATGGCATCGGACATCAACTGGGATCCT
GCTCTTTCCAAGCTGATCAGCACGCTCAAGGAGTCGGAGAATCTATCCAA
TGACCAGGAAATCGACTTCCTGAAGGCCTTGCTTGAATCCAAGGAACTAA
ACGCGCTGGTCAATGTCCACACGAAGGTGGCCAAAGTGGGTCGAGATGAT
CGTCTGGCCCCGGTGCTCTCCACCTCTGCCCAGGTGTTGTACGAAGTCCT
GGAGCAGCTGTCCCAGCATTGTCATCTGAACGATGACTGCAAGGAGGCCT
TTCACCTGCTGCAGGACTCTCACCTGCAGCACCTTCTGTTCGCCCACGAT
GCGATTGCCCAGAAGGACTTCTACCCGCACCTGCCGGAGGCGCCTGTCGA
AATGGACGAGGACGAGGAGACCATCAAGATTGTGCAGCTCGTCAAGAGCA
ACGAGCCCCTGACAGGAGCACAGAGTACGGAGCCAATTGTTGGCGCCACC
ATTAAAACGGACGAGGAGTCGGGCAAGATAATCATCGCCAGAATTATGCA
CGGCGGCGCTGCAGATCGCTCCGGATTGATTCACGTCGGCGACGAGGTCA
TCGAGGTCAACAACATCAACGTGGAGGGCAAGACGCCGGGCGATGTGCTC
ACCATACTGCAAAACTCGGAGGGCACCATTACCTTTAAGCTGGTTCCCGC
GGACAACAAGGGCGCCCAGCGCGAGTCCAAAGTGCGGGTGAGGGCCCACT
TTGACTACAATCCGGATGTGGATCCCTACATTCCGTGCAAGGAGGCGGGT
CTGGCCTTCCAGCGCGGCGATGTGTTGCACATTGTGGCCCAAGACGATGC
CTACTGGTGGCAGGCGCGCAAGGAGCACGAGCGCTCGGCAAGAGCCGGTT
TGATTCCCAGCCGGGCGCTGCAGGAGCGTCGTATCTCACGACGTACACAG
AGACGGCATCGATCTGACTCGAGCAGACGACGACTTTGAACGCGAGCAAT
CGCCACGTACGAGGAGGTGGCCAGTTGTATCACGTCGGAGTCTTCAGGCA
TATGTCTCATCGGACACCC
UFO06096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| metro-RB | 2665 | CG30021-RB | 427..1506 | 6..1069 | 4905 | 97.9 | Plus |
| metro-RA | 2782 | CG30021-RA | 427..1399 | 6..972 | 4670 | 99.1 | Plus |
| metro-RD | 2635 | CG30021-RD | 883..1476 | 492..1069 | 2490 | 96.3 | Plus |
| metro-RA | 2782 | CG30021-RA | 1523..1623 | 977..1069 | 255 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11229599..11229877 | 329..51 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 11228162..11228438 | 935..659 | 1370 | 99.6 | Minus |
| 2R | 25286936 | 2R | 11228509..11228676 | 659..492 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 11229411..11229545 | 461..327 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 11229940..11229985 | 51..6 | 215 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:50 has no hits.
UFO06096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:10 Download gff for
UFO06096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skf-RB | 458..1535 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:17 Download gff for
UFO06096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RB | 423..1500 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:54 Download gff for
UFO06096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RB | 423..1500 | 1..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:54 Download gff for
UFO06096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11228116..11228437 | 660..974 | 97 | <- | Minus |
| 2R | 11228509..11228676 | 492..659 | 100 | <- | Minus |
| 2R | 11229004..11229033 | 462..491 | 100 | <- | Minus |
| 2R | 11229411..11229542 | 330..461 | 100 | <- | Minus |
| 2R | 11229599..11229876 | 52..329 | 100 | <- | Minus |
| 2R | 11229940..11229987 | 1..51 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:17 Download gff for
UFO06096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7116916..7117047 | 330..461 | 100 | <- | Minus |
| arm_2R | 7115621..7115942 | 660..974 | 97 | <- | Minus |
| arm_2R | 7116014..7116181 | 492..659 | 100 | <- | Minus |
| arm_2R | 7116509..7116538 | 462..491 | 100 | <- | Minus |
| arm_2R | 7117104..7117381 | 52..329 | 100 | <- | Minus |
| arm_2R | 7117445..7117492 | 1..51 | 92 | | Minus |
