UFO06102.5prime Sequence
1127 bp (995 high quality bases) assembled on 2009-08-08
> UFO06102.5prime
CAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAATCTCAGGG
TTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAGGTCTTCCG
ATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCTAAGCTCGG
GCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCTTTCCTGGA
AAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGATACACCGGT
AGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTCCTACATTC
CGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCCGCCTCTTT
GTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTGAATTACAT
CGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCGGGCCTATC
CCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATCTGGTGTCC
GTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTTATCGACAC
GGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCGTCCCAGCA
TTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCTTCGATGTT
CCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATCACCGTGGA
TGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCCGGATCTGG
TGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAATCTGGTCC
TTCGAGCACAACTACTTCAACTTCGATCCGCTGTCCGGGGATCTCAGCAT
TGGCGGCCAGACCTTCCGCTGGGACGATGGCATCTTCTCATAACTGTGGG
GGGCCCAGAAACTGGATGGGAGCCGCGATGCCTACTTCCATCCATGGCCA
GTACGATGAGTTTGTGGTCCCCAACCGGGTCTGCAGCAAGAATCCAACGC
GCACGTTCCGATCATGGACGATTTCGGGTACTCGGAGCGGTGTTCGTCAA
CCAGTCTACGATGCACGCTACGATCTGGAACTGGGGTGATCTTCTCGATG
AATCCAGGCCACGGATTGGCTGCTGAA
UFO06102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-f2-RA | 1462 | CG8063-RA | 43..1175 | 9..1125 | 5095 | 97.6 | Plus |
| yellow-f-RC | 1391 | CG18550-RC | 234..953 | 303..1018 | 1085 | 77.3 | Plus |
| yellow-f-RB | 1406 | CG18550-RB | 249..968 | 303..1018 | 1085 | 77.3 | Plus |
| yellow-f-RC | 1391 | CG18550-RC | 89..185 | 41..137 | 245 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12993783..12994326 | 1095..564 | 1965 | 95 | Minus |
| 3R | 32079331 | 3R | 12994428..12994819 | 570..179 | 1960 | 100 | Minus |
| 3R | 32079331 | 3R | 12994934..12995105 | 180..9 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 12992468..12992733 | 568..303 | 505 | 79.3 | Minus |
| 3R | 32079331 | 3R | 12991948..12992399 | 1018..571 | 485 | 75.9 | Minus |
| 3R | 32079331 | 3R | 12993017..12993113 | 137..41 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:59 has no hits.
UFO06102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:15 Download gff for
UFO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f2-RA | 37..1168 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:07 Download gff for
UFO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f2-RA | 37..1168 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:51 Download gff for
UFO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f2-RA | 37..1168 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:51 Download gff for
UFO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12993760..12994319 | 571..1114 | 95 | <- | Minus |
| 3R | 12994428..12994817 | 181..570 | 100 | <- | Minus |
| 3R | 12994934..12995109 | 1..180 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:07 Download gff for
UFO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8819482..8820041 | 571..1114 | 95 | <- | Minus |
| arm_3R | 8820150..8820539 | 181..570 | 100 | <- | Minus |
| arm_3R | 8820656..8820831 | 1..180 | 97 | | Minus |
