UFO06103.5prime Sequence
1099 bp (1013 high quality bases) assembled on 2009-08-08
> UFO06103.5prime
CAGTCGACATGAATTGGACGCGCGTGCTGTTAATCGGGTTGACCGCCTTG
GCGCTGACATTTGTGGATGTTGCATCACTCTCACTCGATCCAGTTGCTTC
TGCTGAACTGGAGCAGTTTATACGCAAAGGAGATGTGGTCATATCAACGC
GACACATTAGACCTCGTCGAAAGTTGCACATATCCATAGAAGCACTCTTC
ATGATCGACTTCCCGATGCTGAAGCACAAGATGTCCTTCTTCCTGGACCG
CAAACAGCAGCGGGTAACGTTGGACATTAGTGCGAACGGAGCCACCGAGT
CGCGCAACTTCGAGATACCCAACATCAATGAGACAAGCACCATCCGATCC
CTGGCACTGCAGTTCTCCAAGAATCGCATAACGCTCCATGTGGACTGCAA
GGCGAGCACGCATCACGACATCGACATGAACCTGGCCAAGCTGTACACCC
AGATGGACGATCCGGTGATCAAGCTGTTCCGTGAGCGCAAGTATCCCCTT
CACTTCGACGGGGACATGGAGCACTCCCTGCAGCGGGCCAATTGCCAGAA
GGGCAACCATCGTCGTGGCAATCGTCGCATGCTGCGCAACAAGATCACCG
AGCGTGAGAAGAACAAGAAGCGCGATGTGCGCGGCTGGTATGAGCCAACG
ATCGCCCGGGAAGGAGTCGTGGATCACAGACACCAGGAGGTGCCAACGGA
CGTGGAGCGCGGTGATATTCCCGTTCTGAATGGCGATTGCGAAGACGCCC
TCGCACGATCGCTCAGCGATTTACTGGCTCTGGTGAAGCTGCTCCGCGAA
GACGTCGCCCACCAGCGCCAGGAGATTGCCTACCTGCGTATGCTCCTGGA
GAACTGTGCCGGCTGCAAGATCCCCTCACCACCGACAACCAACTGCGCAT
CGAGCCCGACTGCCGTTCCGCCATCCCTGTTATCCTGGAGTGGAGTGCTT
GGACTCGCGCCGGTCCCCGATGTGCCACTGTCCCCTTGGCTTCATTGGCG
ATGCAGAGCTGCAAGCCGGGCGTTACTGCGCCCATCACATGGTGCTATCC
AGGCGTCATGTCACGATACTGATGGACCCATGTGATCTGTCAGCCGCTA
UFO06103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp-RF | 3892 | CG11326-RF | 576..1645 | 9..1069 | 5080 | 99 | Plus |
| Tsp-RE | 2112 | CG11326-RE | 427..1496 | 9..1069 | 5080 | 99 | Plus |
| Tsp-RC | 2135 | CG11326-RC | 450..1519 | 9..1069 | 5080 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6700181..6700501 | 476..156 | 1605 | 100 | Minus |
| 2L | 23513712 | 2L | 6697262..6697459 | 938..743 | 890 | 99 | Minus |
| 2L | 23513712 | 2L | 6699765..6699903 | 744..606 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 6699987..6700117 | 606..476 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 6701750..6701834 | 93..9 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 6700553..6700622 | 160..91 | 350 | 100 | Minus |
| 2L | 23513712 | 2L | 6697018..6697128 | 1041..937 | 295 | 92.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:37 has no hits.
UFO06103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:14 Download gff for
UFO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 440..1517 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:43 Download gff for
UFO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 446..1523 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:53 Download gff for
UFO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 446..1523 | 1..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:53 Download gff for
UFO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6697003..6697127 | 938..1057 | 91 | <- | Minus |
| 2L | 6697263..6697457 | 745..937 | 98 | <- | Minus |
| 2L | 6699765..6699902 | 607..744 | 100 | <- | Minus |
| 2L | 6699987..6700116 | 477..606 | 100 | <- | Minus |
| 2L | 6700181..6700496 | 161..476 | 100 | <- | Minus |
| 2L | 6700553..6700619 | 94..160 | 100 | <- | Minus |
| 2L | 6701750..6701838 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:43 Download gff for
UFO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6699987..6700116 | 477..606 | 100 | <- | Minus |
| arm_2L | 6697003..6697127 | 938..1057 | 91 | <- | Minus |
| arm_2L | 6697263..6697457 | 745..937 | 98 | <- | Minus |
| arm_2L | 6699765..6699902 | 607..744 | 100 | <- | Minus |
| arm_2L | 6700181..6700496 | 161..476 | 100 | <- | Minus |
| arm_2L | 6700553..6700619 | 94..160 | 100 | <- | Minus |
| arm_2L | 6701750..6701838 | 1..93 | 95 | | Minus |
