UFO06105.5prime Sequence
1030 bp (790 high quality bases) assembled on 2009-08-08
> UFO06105.5prime
CAGTCGTCATGCGTGACTGGATGCCAGTGCTCTTCTGCGGACTGTCCGTG
CCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCCAAGTTCTG
GAGCAGTGACTTTGAGGAGTCCCGGGTGATTCCGCCGGTGCGCTGGCTCT
TCTCCACACTGGCGCCCTTGGCCCTGATGACTGTGGCTCTGCGCCGGAGG
AGCGTCAACCGATCTGGAGCTGCGCTGGGCATTCTGGTGGCCTTCATTCT
CTCCATCGCCAGCCATCCGTTCTTCGCCAGCTTGGTGGTGTTCTTCTTCA
GCTCATCGCGGGCCACCAAGTTCCGCGCGCACATGAAACGCCGTTTCGAG
AGCGATTTTCGCGAGGGCGAAGGCCAACGAAACTGGATACAGGTACTCTG
CAACGGAGGCATGGCCGCCCAGCTTGCATTGCTTTATCTGCTGGACTGCG
GTAGTGGCGAGCGGGCGGTGGACTTCGCACGAGAATACCGATCCAGCTGG
CTGGGTGTGGCCGTTATGAGTGCGTTTGCCTGTTGCAATGGCGACACCTG
GTCCAGTGAACTAGGATCCGTGCTGTCGCAACGCGATCCAGTTTCTATCA
TCACCTGGCGCAGAGTGCCGCGCGGTACCAATGGTGGGGTTTCGTTGCTC
GGCGTCGCGGTGAGTCTGCTCGGCGGTCTGCTCGACGGCTTTGGCTATTT
CGTCACCGTTCGTTACACGGTTGAGGCCAAAATGCTTCTGATTAGCCCAC
CACATTGGCCAATCTTCGACATCTGTAGGCATCGCTCGGACATTTGCCGT
GACATATTGGACTCTGTCCTAGTGATCTGCTGCAGTTCTCGGGCATCAAT
GAGGAACGCATGATTGTGGATACACCTGCAAAGGGAGTGCGCACGTAGCG
GACTGCGCATCACTGACAATCATAGTGTCAACCTGATTTCAGCATCGTCA
CCGGCGTCACCATTCTTCTCCTGGCCCAATAATTCTGGCCCGTGCGAGCA
AGCTTTCTATACCATCGTTTAGTAGCGCGC
UFO06105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10171-RA | 1611 | CG10171-RA | 60..1048 | 9..996 | 4410 | 96.9 | Plus |
| CG10171-RB | 1845 | CG10171-RB | 134..1134 | 9..996 | 4280 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13386719..13387599 | 996..117 | 3695 | 96.4 | Minus |
| 3L | 28110227 | 3L | 13387666..13387774 | 117..9 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:42 has no hits.
UFO06105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:12 Download gff for
UFO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RA | 89..1092 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:59 Download gff for
UFO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RA | 53..1056 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:41 Download gff for
UFO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RA | 53..1056 | 1..1004 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:41 Download gff for
UFO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13386711..13387598 | 118..1004 | 96 | <- | Minus |
| 3L | 13387666..13387781 | 1..117 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:59 Download gff for
UFO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13380766..13380881 | 1..117 | 96 | | Minus |
| arm_3L | 13379811..13380698 | 118..1004 | 96 | <- | Minus |
