UFO06107.5prime Sequence
1121 bp (1016 high quality bases) assembled on 2009-08-08
> UFO06107.5prime
CAGTCGACATGGGCAACAAGAACTCGTGCTGCGCGTACTCCAGTCCGCAG
TCGGACCGCAAGTCTAAGGACATGCCGCCCGTCTTCGAGGAGCGGATTAT
CCAGCTGGGTCATCCGCCGCACACGTCACAGCACCAGTTGGACGGCCACC
ATGGATCCGCGTCGGCGGTGCACCTGCATCACCATCATCACGGCCACAAT
CAGCAACAGAATCAGCAGGGTGGCGGCGGTGACAACTATGAGAACCAGCA
GAATCTGCAGCACATCTCCGAGCGAGAGGCGCTGGAGGGCGAGGAGGATC
CGTCGGTCGATCCCACTGCAGCCACCATGTTCCTGGAACGATCAAAGGTG
GAGAACGGCGGCATGACGCGCAAGCGTTCGCAACAGCAGATTGCCCAGCA
GGCGGGCAGCGGCGGCGGAGGAGGCGGCGGCGGTGGCGGCGGCAGTACTC
CCGGTGGCAATAGTTGCGGCGGTGGTGGCGGCATGAAGAAGAGCTCCTCC
TGCTCGACGATCTATCTGGACGACAGCACTGTGTCGCAGCCGAATCTTAA
GAATACGGTCAAATGCGTCTCACTGGCCATTTACTATCACATCAAGAATC
GGCAATCGGATCGCCGGCTGGACATCTTCGACGAGAAGCTTCATCCGCTG
ACCCACGACCAGGTGCCGGATAACTATGACACGCACAATCCGGAACACCG
GCAGATCTACAAGTTCGTGCGCACGCTCTTTAACGCCGCCCAGCTGACGG
CCGAGTGTGCGATCATCACGCTAGTCTACCTGGAGCGGCTACTCACCTAC
GCCGAGCTGGATGTGGGACCCTGCAACTGGAAGCGCATGGTGTTGGGTGC
CATTCTCCTCGCCTCAAAGTGTGGGATGACCAGGCCGTTTGGAATGTAGA
TTACTGCCAAATACTCAAAGACATCACCGGTGGAGGAAATGAACGAGCTG
GGAGCGCCAGTTCCTCGAGCTGCTGCAGTTCAACATCAATGTTACCGGTC
CTCGGTGTACGCCCAAATACTACTTTCGACCTGCGCACGCCTCGCCGAAG
ACACGAGCTCCAACTTCCCCCACGAGCGCCTGTTCCAGGAGCGGACCCAA
AGCTGGAAGGCCATGTCCGGT
UFO06107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycY-RB | 2553 | CG14939-RB | 308..1410 | 9..1117 | 5095 | 98 | Plus |
| CycY-RA | 2148 | CG14939-RA | 308..1410 | 9..1117 | 5095 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11811591..11812431 | 849..9 | 4205 | 100 | Minus |
| 2L | 23513712 | 2L | 11811311..11811500 | 1040..846 | 620 | 94.9 | Minus |
Blast to na_te.dros performed 2014-11-28 18:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6898 | 111..218 | 116 | 60 | Plus |
UFO06107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:12 Download gff for
UFO06107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14939-RA | 321..1391 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:15 Download gff for
UFO06107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycY-RA | 301..1371 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:16 Download gff for
UFO06107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycY-RA | 301..1371 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:16 Download gff for
UFO06107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11811274..11811499 | 847..1080 | 93 | <- | Minus |
| 2L | 11811594..11812438 | 1..846 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:15 Download gff for
UFO06107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11811274..11811499 | 847..1080 | 93 | <- | Minus |
| arm_2L | 11811594..11812438 | 1..846 | 99 | | Minus |
