UFO06110.5prime Sequence
1071 bp (974 high quality bases) assembled on 2009-08-08
> UFO06110.5prime
CAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGCTGAACAGC
CTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCACAACAACTA
CTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGAGCCTCCAA
TCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTGACACGGTT
TTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAACGCGATGGC
CAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTGCCACATGC
ACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGGACCATTTC
CGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCTGTTGCCGA
CGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCCGAATCTTT
TCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACGTGTCGCCG
CCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGATTGTGTGCG
CGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAATCCCAAGA
TGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACTTCGACCTC
GCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGTAAGATTTC
CGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCTCGTCAAGG
ACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACGCCGTACTC
GCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAGATGTTCGC
CAACGGTGTCGTTGAGCTCGTGCGCAAGGATGCGTCACCAACAGCAAGAG
AGATGCACCACGCAGGATTGTGGGCTCCTTCCTCATCGGTGACAAGGCTC
TGTACGACTTCGTGGACAACATCCCTTCATCGAGATGTACGGCCATCGAC
TATGTGAACAACCAGCATGGGAACGCAGCTCGATGACGCATCACGCTGCA
TCAGTGAACGACTGACGGTGC
UFO06110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-RC | 1791 | CG7920-RC | 170..1178 | 8..1012 | 4825 | 98.9 | Plus |
| CG7920-RA | 1910 | CG7920-RA | 289..1297 | 8..1012 | 4825 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30011669..30012062 | 582..189 | 1955 | 99.7 | Minus |
| 3R | 32079331 | 3R | 30011203..30011608 | 982..582 | 1740 | 97.5 | Minus |
| 3R | 32079331 | 3R | 30014811..30014996 | 193..8 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:16 has no hits.
UFO06110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:16 Download gff for
UFO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 361..1391 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:00 Download gff for
UFO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1311 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:51 Download gff for
UFO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1311 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:51 Download gff for
UFO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30011203..30011607 | 583..982 | 97 | <- | Minus |
| 3R | 30011669..30012061 | 190..582 | 99 | <- | Minus |
| 3R | 30014815..30015004 | 1..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:00 Download gff for
UFO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25836925..25837329 | 583..982 | 97 | <- | Minus |
| arm_3R | 25837391..25837783 | 190..582 | 99 | <- | Minus |
| arm_3R | 25840537..25840726 | 1..189 | 98 | | Minus |
