UFO06111.5prime Sequence
1086 bp (990 high quality bases) assembled on 2009-08-08
> UFO06111.5prime
CAGTCGACATGGCTTCTCTTTACGTCGGTGATCTCCCACAGGACGTCAAC
GAATCGGGACTTTTTGACAAGTTCTCGTCTGCTGGTCCAGTGCTGTCCAT
TCGTGTCTGCCGCGATGTGATTACCCGTCGCTCGTTGGGCTATGCCTACG
TCAACTTCCAGCAGCCAGCCGATGCTGAGCGTGCTTTGGACACCATGAAC
TTTGACCTGGTTCGCAACAAGCCCATTCGCATTATGTGGTCTCAGCGTGA
TCCTTCTCTTCGTCGCTCAGGTGTGGGCAACGTGTTCATCAAGAACTTAG
ATAGGGCCATCGACAACAAGGCAATCTACGACACTTTCTCCGCCTTCGGC
AACATTTTAAGCTGCAAGGTAGCCACCGATGAAAAGGGCAACTCAAAGGG
CTATGGATTCGTCCACTTCGAGACCGAGGAGGCCGCAAACACGTCCATCG
ACAAAGTCAATGGCATGTTGCTCAACGGCAAGAAGGTCTACGTGGGTAAG
TTCATCCCGCGCAAGGAGCGCGAGAAGGAGCTGGGCGAGAAGGCTAAGCT
CTTCACCAATGTATATGTGAAGAACTTCACTGAGGATTTCGACGATGAAA
AACTGAAGGAATTCTTTGAGCCCTACGGCAAGATAACCAGCTACAAGGTC
ATGTCCAAGGAGGATGGCAAGAGCAAGGGCTTCGGATTCGTTGCATTCGA
GACAACAGAGGCTGCTGAGGCGGCCGTTCAGGCTCTCAATGGCAAGGACA
TGGGAGAGGGCAAGTCCCTGTACGTGGCTCGTGCCCAGAAGAAGGCCGAA
CGCCAGCAGGAGCTGAAGCGCAAGTTCGAGGAACTGAAGCAGAGCGTCAC
GAGTCTGTGTTCGGCGTTAACTTGTACGTTAAGAACCTGGACGACACAAT
CGATGACGATCGTCTGCGCATCGCGTTCTCCTCCATACGGCAACATCACA
TCGGCAAGTCATGACCGATGAGGAGGTCGCCTCCAAGGGATTCGGCTTCT
TGTGCTTCATGCGCAGCGAGGCTACCTGCGCCCGTCACCGACTTGAACGG
TCGCGTCTTCGGCAGTAAGCCGGTTGTACGTGGCTT
UFO06111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 198..1278 | 9..1086 | 5060 | 98.4 | Plus |
| pAbp-RB | 3870 | CG5119-RB | 62..1142 | 9..1086 | 5060 | 98.4 | Plus |
| pAbp-RC | 3127 | CG5119-RC | 275..1355 | 9..1086 | 5060 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18143412..18144327 | 174..1086 | 4040 | 97.5 | Plus |
| 2R | 25286936 | 2R | 18141507..18141677 | 9..179 | 825 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24524945..24525124 | 467..288 | 225 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:16 has no hits.
UFO06111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:15 Download gff for
UFO06111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RF | 238..1318 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:41 Download gff for
UFO06111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1355 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:28 Download gff for
UFO06111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1355 | 9..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:28 Download gff for
UFO06111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18141507..18141672 | 9..174 | 99 | -> | Plus |
| 2R | 18143413..18144327 | 175..1086 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:41 Download gff for
UFO06111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14029012..14029177 | 9..174 | 99 | -> | Plus |
| arm_2R | 14030918..14031832 | 175..1086 | 98 | | Plus |
