UFO06113.5prime Sequence
1102 bp (1022 high quality bases) assembled on 2009-08-08
> UFO06113.5prime
CAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCGGCCGGGCA
AACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTGCAGCCGGG
AGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAAGCTGCGCT
ACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGTCCAGGAGC
TGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGATCTGAACTC
GGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTTTGAATCTC
CTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCAAACCTCCT
CCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTGACTTCTGC
CACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCATGCCAAATC
TGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGCTTCCCGAC
TTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCCCCACAAGC
ATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACCCGACAGAT
TAATAAGTCCGCCCAAGGCAAAAGCAGTACAAACTGAGGACACCAAAGCC
AAGGAACATGTGGCTCATCTGAAGGGAGCTACGTCCCAAAGCTGGCAAGG
CAAAGCTGAAATACCATTACTACCCGCTTGTGTGAAGGCAAGTGTGAGGA
TGTCTCCTAGCATCAAATCTAAAGGGGTCTCCCTTCAGCAGTCCGCCCAA
GAAAGCAACCACCCAGCCGCAAGGCGCCGACGTTGTCCACACAGGCCACG
ACGCACTGCAGCCATGGCTTCACCACCAGCTCGTCGTCGCCCAACCGTGT
GTGACCCGCTCTGCCACATGCTGGCGCTCTTCGGCATCGCGCAGTCTCGT
CAGCTGCAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCCAGGTAGTGTC
ATATCATATCATATCATATCATATCCACTAGCTAGGAGATCTTGTCATGA
CTAGTGCTGATCCCACAATAAAACGCTGCGCAACGAACGATCTGACATCG
AA
UFO06113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8229-RE | 1951 | CG8229-RE | 308..1247 | 8..946 | 4615 | 99.6 | Plus |
| CG8229-RD | 1459 | CG8229-RD | 308..1123 | 8..824 | 4060 | 99.9 | Plus |
| CG33199-RB | 1523 | CG33199-RB | 261..387 | 822..946 | 570 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8949845..8950660 | 824..8 | 4035 | 99.9 | Minus |
| 2R | 25286936 | 2R | 8948817..8948943 | 946..822 | 520 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:30 has no hits.
UFO06113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:53 Download gff for
UFO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8229-RE | 323..1275 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:01 Download gff for
UFO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8229-RE | 305..1257 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:25 Download gff for
UFO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8229-RE | 305..1257 | 1..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:25 Download gff for
UFO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8948807..8948941 | 824..954 | 96 | <- | Minus |
| 2R | 8949846..8950663 | 1..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:01 Download gff for
UFO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4836312..4836446 | 824..954 | 96 | <- | Minus |
| arm_2R | 4837351..4838168 | 1..823 | 99 | | Minus |
