UFO06114.5prime Sequence
1090 bp (988 high quality bases) assembled on 2009-08-08
> UFO06114.5prime
CAGTCGTCATGTTTTTGACTCAACAGCAGCAGCTGCCGCAGCTTAAACAG
CAACTACAGCAGCAGAGGCAACAGGAATTTTCGAAGCGAACCCAGCCTTA
CGGAGTGGGTCCAGGCACACCGTTTAGCCTGGGGATACAGCGCAATTCGA
ACTCTCTTAGCCATCGATATCCGATGCTCTTCCCACCCCAGAGCCTTAAC
AGCTATGGTGATGGTGGCCAGGAGTTTGCAAGCTTGCCTCCCCTGAACAA
CATGATGGGAGGGCCGGAAGGGCTTGGGTGCGATCAGGAACCGAATTCGA
CGGATGTGCTGGATGGCAGCGAAAGCAATCCCAACTTTACCAAGGGATTT
CGGTTCAGCGATCCGTGCCTACTGAACCCCTCCGATAATGACTCTAAGCT
GAGTGGCCAGAATACACCAGAGTGTCGAAATGTGAACAACAATGGCAGTG
GCTGTGATCTGGCACATCAAAACAAATTTTTCGCGGCTCTAATGGAACAA
ATAAACATATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATAA
TACAAAAGTTGATATCGAAGCTTTAAAGCACTCCCCTAATAGCCAGCACT
GGGCAGGTGTAGGCTTTGGGGGCATGCGGCACCGTAGAGATAGCTTAAGC
GGGCTAAGCACACAAAGTCAACCTCTTATTCTTGGCAGTGGATTGGGAGG
GACACACAGCCCAGCGCCCACATTTCACTCACGCGCCTACACTCCAGGAA
TGATGACGGATGTCGTGCGGGAAGTGAAGGAGGCAGCGCGCATACGCGAA
GATGCACTGCTAAGTCGAGTAAAATTAATGGTTGAAGAACGTCAGTGTTC
CTTAAACGAGGGAAATGTCCGAATTCTGAGAGATATAGACGATCTAAAGA
CCCAAGTAATGCAGTTGCGACTGGAGAAAAAGGAGACTAACAAACGCTCT
CACATCTGGATCGAAAACAAGTGCTTCGTCAGCTCTGGCGTGTATACAGC
GGCATCAGTACGACTTATTACGAATGACGATCCATGGATCGAGCATTTCG
ATGGGGTGGCGGCGGGATGTGGGTCGACTCGAAACGACGG
UFO06114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-RF | 2390 | CG9795-RF | 669..1654 | 9..989 | 4790 | 99.4 | Plus |
| CG9795-RE | 2573 | CG9795-RE | 669..1654 | 9..989 | 4790 | 99.4 | Plus |
| CG9795-RD | 2825 | CG9795-RD | 635..1620 | 9..989 | 4790 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4323952..4324164 | 346..558 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 4323687..4323889 | 144..346 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 4324335..4324509 | 557..731 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 4323488..4323622 | 9..143 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 4324584..4324672 | 729..817 | 430 | 98.9 | Plus |
| 3R | 32079331 | 3R | 4324729..4324811 | 817..899 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 4324871..4324934 | 898..960 | 270 | 98.4 | Plus |
Blast to na_te.dros performed 2014-11-28 21:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6849 | 21..76 | 172 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..6922 | 21..74 | 171 | 79.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1184 | 21..82 | 155 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2362 | 21..76 | 154 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2399 | 21..77 | 150 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6848 | 21..96 | 146 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2420 | 21..77 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 21..77 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 21..77 | 141 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1135 | 21..77 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6858 | 21..73 | 139 | 73.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3364 | 21..94 | 136 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6911 | 21..87 | 135 | 70 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..715 | 98..22 | 133 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2870 | 21..74 | 128 | 74.1 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..726 | 74..20 | 122 | 69.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2374 | 21..73 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2832 | 21..63 | 116 | 74.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1162 | 21..74 | 110 | 70.4 | Plus |
UFO06114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:55 Download gff for
UFO06114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RC | 657..1651 | 2..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:22 Download gff for
UFO06114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RD | 630..1624 | 2..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:45 Download gff for
UFO06114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RD | 630..1624 | 2..993 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:45 Download gff for
UFO06114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4323483..4323622 | 2..143 | 97 | -> | Plus |
| 3R | 4323687..4323889 | 144..346 | 100 | -> | Plus |
| 3R | 4323953..4324164 | 347..558 | 100 | -> | Plus |
| 3R | 4324337..4324510 | 559..732 | 99 | -> | Plus |
| 3R | 4324588..4324672 | 733..817 | 100 | -> | Plus |
| 3R | 4324730..4324811 | 818..899 | 100 | -> | Plus |
| 3R | 4324873..4324971 | 900..993 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:22 Download gff for
UFO06114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 149205..149344 | 2..143 | 97 | -> | Plus |
| arm_3R | 149409..149611 | 144..346 | 100 | -> | Plus |
| arm_3R | 149675..149886 | 347..558 | 100 | -> | Plus |
| arm_3R | 150059..150232 | 559..732 | 99 | -> | Plus |
| arm_3R | 150310..150394 | 733..817 | 100 | -> | Plus |
| arm_3R | 150452..150533 | 818..899 | 100 | -> | Plus |
| arm_3R | 150595..150693 | 900..993 | 93 | | Plus |
