UFO06119.5prime Sequence
1139 bp (1016 high quality bases) assembled on 2009-08-08
> UFO06119.5prime
CAGTCGACATGGCAACACACCTCCTCCGAAACGGCGCTACATGTTGGCTG
CTCAGGAACTGCATTTCCCAACGTGCCGCGTTGAGACGCTGCCTGCATGT
GACCTCAAGCCTGGACAAGACGGTCTCCTTCAACCTCAGCGACATTGGCG
AGGGAATCCGCGAGGTAACCGTCAAGGAGTGGTTCGTGAAAGAGGGCGAC
ACCGTGGAGCAGTTCGACAATCTCTGCGAGGTGCAATCGGACAAGGCATC
GGTGACCATCACCAGTCGCTATGATGGCAAGATAACCAAGATTCACCACA
AAATCGATGAGATTGCTCTGGTCGGCAAGCCTCTGCTCGATTTCGATGTG
GTGAATGAAGACGAAGATGAGCCGGAGGACTCTTCTTCCTCTTCCTCCTC
CACATCTTCCGATAGTTCAGCAAGCGAAAACGAGGAGAAGCAATCAGCTG
AAGCATCTGCGACGCCCACAGAAGGTCGTGTGATCATACCCGCCACGCCC
TCGGTTCGTCGTCTGGCCAAGGAACACCAGTTGGATCTGGCCAAGGTGCC
AGCAACGGGAAAGAATGGTCGTGTGCTTAAGGGTGATATTCTGGAGTTTC
TGGGCCAAGTTCCTCCCGGTACTAACGTTCCACATCCCACACTATTGGCG
AAAACGCCTAGTGCTGCTCCAAGTGGAGCAGCAAGTGTTTCTGTGCCCGC
TGATCGCGTCGAAGTGCTCAAGGGAGTGCGCAAGGCCATGCTGAAATCGA
TGACGGAATCCCTGAAAATCCCCCATTTTGCTTACAGCGACGAAATCGAC
ATGACCCAGTTGATGCAATTCCGTAACCAACTGCAGTTAGTGGCCCAAGG
AGAATGGCGTGCCCAAGCTCACGTTCATGCCGTTCTGCATCAAGGCTGCT
AGCATTGCGCTGTCCAAATATCCAATTGTTAACAGCTCCCTGGATTGGGC
CAGCGAATCGCTGGTCTTCAAGGGTGCCCACAACATAAGCGTTGCCATCG
ATACACCACAGGGTCTAGTGGTGCCGAATATTAAGAACTGCCAGACAAAG
ACTAATTATCAGATGCTAGATCTGATGCACTGGTGGAGCGCGGTAGGACT
GTCCTGTCTCCGCAGACTTGCCATGGACCTTCCCTTCAC
UFO06119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5599-RA | 1872 | CG5599-RA | 103..1236 | 9..1132 | 5320 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15086802..15087486 | 80..764 | 3425 | 100 | Plus |
| X | 23542271 | X | 15087552..15087841 | 764..1054 | 1390 | 99.3 | Plus |
| X | 23542271 | X | 15086227..15086303 | 9..85 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:44 has no hits.
UFO06119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:57 Download gff for
UFO06119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5599-RA | 83..1211 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:09 Download gff for
UFO06119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5599-RA | 96..1224 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:42 Download gff for
UFO06119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5599-RA | 96..1224 | 1..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:42 Download gff for
UFO06119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15086220..15086298 | 1..80 | 95 | -> | Plus |
| X | 15086803..15087486 | 81..764 | 100 | -> | Plus |
| X | 15087553..15087918 | 765..1122 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:09 Download gff for
UFO06119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14980253..14980331 | 1..80 | 95 | -> | Plus |
| arm_X | 14980836..14981519 | 81..764 | 100 | -> | Plus |
| arm_X | 14981586..14981951 | 765..1122 | 96 | | Plus |
