UFO06120.5prime Sequence
1109 bp (1017 high quality bases) assembled on 2009-08-08
> UFO06120.5prime
CAGTCGTCATGTCTGCTGAAGCCGAAGCAATCGTCACAACGGCAACTGCC
GATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTTGCTGCTGA
TACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAGCGGAAAGG
CAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGCTGTTCAGC
CAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCAGCTGACGA
GCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGAACTGGCCG
ATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAATTGCAATG
GCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCTGCCGATGA
TGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGAAGATGGAG
CGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAAATGGTGCA
AGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGGTCCGATGA
GGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGAAAAGCCCT
CTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCAATGGCGGT
GGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCGAATGGTGA
GGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGAGGAAGAAC
CCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCTGGAAATTC
TAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGTGGACTCCCC
TACTTGGCTGATGTTCAGACTGAGCTGGCTAACATTGAGTTTGAGAATGG
AATACTAGAGCGGCACGCGAGATTATGAGAAAGCACTGAGATCCACGGAG
AGCTGCCCACAAGAAACCGACGTGCTTTGGCCGAGTTGCATTACAGGATC
GGCTGACCTATTTTGATGCAGCCACTCCATCAGAGGAGCGACAGCCACCT
GGCGTCAATCAGCGTGTTTGTATCGAGGAGGAATCGCCGAGAATAATGCA
GACGACTAG
UFO06120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8223-RB | 2253 | CG8223-RB | 470..1560 | 9..1096 | 5015 | 98 | Plus |
| CG8223-RA | 1999 | CG8223-RA | 216..1306 | 9..1096 | 5015 | 98 | Plus |
| CG34135-RC | 7398 | CG34135-RC | 3552..4156 | 927..326 | 2935 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8752514..8753110 | 326..920 | 2870 | 99.5 | Plus |
| 3R | 32079331 | 3R | 8752082..8752398 | 9..325 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 8753180..8753281 | 927..1027 | 335 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:22 has no hits.
UFO06120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:06 Download gff for
UFO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 203..1298 | 4..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:40 Download gff for
UFO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 211..1306 | 4..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:58 Download gff for
UFO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 211..1306 | 4..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:58 Download gff for
UFO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8752077..8752398 | 4..325 | 99 | -> | Plus |
| 3R | 8752514..8753118 | 326..927 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:40 Download gff for
UFO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4577799..4578120 | 4..325 | 99 | -> | Plus |
| arm_3R | 4578236..4578840 | 326..927 | 99 | -> | Plus |
