UFO06134.5prime Sequence
1107 bp (1015 high quality bases) assembled on 2009-08-08
> UFO06134.5prime
CAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAGCCACCGGC
CTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTCGAAGTCCA
TCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCAGTGGTATG
TGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCTTCGCCTAC
TTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCACGAATGCT
GGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTACTTTCAGC
GGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCGTGCGCAGC
TGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTCTTTGCCGC
CTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGACCACATTC
ACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGAGCATCGGT
TCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTCGCCGTGCT
GCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTTTGGGGTCT
ACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGTCTGCGGTG
GGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTCGCCGTGTC
TTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCGTCTGTTTC
CTTTCAAGCGTGGCCTAACGCACGCCTACTGGGCACCCAACTTCTGGGCG
CTGTACAATGCCGCCGACAGTTGGCCGCCGGAGTTTTGAAGGTACAGGAT
GGCGGTGCCTCGACGACGTCAGGATTGGTCCAGGAGGTCAGGCACTCGGT
GCTGCCAGCCATCACACCGCCTGTGACTTTTGCCCTGACCGCTCTCTTCA
TGCTGCCCATTTTGGTGAGCTCTTTCGCATGCCAGAAACAAAGTCCGCTG
GTCCTCCTGCGAGCGGTGTTTTGGTGCGGCTGTTCCTCCTTCGTCTTCGC
TGCATGTGCACGAGAGCCATCTATGTGCTCCCTCCGCTCTGTCTGCTTCA
CGCCTGT
UFO06134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| xit-RA | 1640 | CG4542-RA | 78..1182 | 9..1103 | 5190 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6821216..6822120 | 77..979 | 4425 | 99.8 | Plus |
| X | 23542271 | X | 6821093..6821160 | 9..76 | 340 | 100 | Plus |
| X | 23542271 | X | 6822194..6822255 | 988..1049 | 265 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:53 has no hits.
UFO06134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:08 Download gff for
UFO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atx-1-RB | 75..1181 | 9..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:14 Download gff for
UFO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4542-RA | 78..1184 | 9..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:48 Download gff for
UFO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xit-RA | 78..1184 | 9..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:48 Download gff for
UFO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6821093..6821160 | 9..76 | 100 | -> | Plus |
| X | 6821216..6822130 | 77..987 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:14 Download gff for
UFO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6715126..6715193 | 9..76 | 100 | -> | Plus |
| arm_X | 6715249..6716163 | 77..987 | 99 | -> | Plus |
