UFO06137.5prime Sequence
1093 bp (990 high quality bases) assembled on 2009-08-08
> UFO06137.5prime
CAGTCGACATGTCTGGTAATGATGTTTCGGTGACTGAAACAGCACAGAGC
GATCAGAATCTAATGCATACCAAGGAGAAGAAGCGCCGGGTGCGAATCAT
CCTGACTGTTGTAACCACGGTCATAGCGGTTGCTCTATTGGCCACGGCCC
TGGTTTTCATTCTCCGGACGGATGAAAAGGATGCCGACGACTCTGACTCA
AACTCAAACAATGCCATCGATTTGGAGGATGTGCTAAGTGGTCAACTATA
TGCCAAGCGATTCAACGGCAGCTGGAGCAATGGAAACAGTCTCATTTACA
AGGAGAATACGTCCATCATGGAGTTCGATGCCAAGACGGGTGAACGTTCC
ATCCTGCTGGAAGATGCGCAACATTATGTCCTGTACGAAAAGTCCGCCGA
TGGGGAGTTCCTTTTGCTGGCAAAGAACTACAAGAAGAACTTCCGGTACA
GCTTTCTAGCTGAGTACGATCTGTACAATCTGAACACAAAAGAATTCATC
CAGTTGACCATCCAAAACGAGCAGCACTACCTGAGCATGGTCCAATGGTC
ACCGGTGGGAAATGCCCTTGTGATCAATTACGATCGGAATCTGTACTACA
AGGAGAGTGCATTGGCGCAGGAGATTGCCCTCACTAGCGATGAACAAGCG
GGTATACTGAATGGCATTCCCGATTGGGTGTACGAGGAAGAGGTATTCAG
CTCCAATGTGGCCACCTGGTTCAACCCATCGGGCACCCAATTGGCCTTCA
TCAAGTTCGACGATTCGTCCACTCACCTGATCAATTTCCCCTACTACGGA
GATGCCGGCGATTTGCGCTATCAGTATCCACTGCATCAGGTCATCGCCTA
TCCCAAAGGCTGGTTCCTCGAATCCGCGGGTGGAACTGGTGATGGTCGAT
CTAAGAGAGCCGTTGCTGGTGGAGATTTCGTGACCGTGATGCGGTTCGTC
GGCCCTCAACACGGAACGACTACATGTCACGTGTCAGTGGGTGAACGATG
ACACGTCTGTCATCTGATGACGCATCAAAATGCGCTATGTCGTCACCTCG
ACGAACTCAACAGAAAGTGAATTTATAATGTGCCAATCGAGAC
UFO06137.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-RF | 3356 | CG32145-RA | 174..1272 | 9..1090 | 4880 | 97.6 | Plus |
| ome-RG | 4070 | CG32145-RB | 934..1986 | 55..1090 | 4650 | 97.4 | Plus |
| ome-RE | 4109 | CG42280-RE | 973..2025 | 55..1090 | 4650 | 97.4 | Plus |
| ome-RG | 4070 | CG32145-RB | 174..221 | 9..56 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14744530..14745187 | 311..966 | 3100 | 99.1 | Plus |
| 3L | 28110227 | 3L | 14744187..14744443 | 55..311 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 14736088..14736135 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:10 has no hits.
UFO06137.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:19 Download gff for
UFO06137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RF | 171..1130 | 9..966 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:52 Download gff for
UFO06137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RF | 174..1133 | 9..966 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:54 Download gff for
UFO06137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RF | 174..1133 | 9..966 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:54 Download gff for
UFO06137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14736088..14736135 | 9..56 | 100 | -> | Plus |
| 3L | 14744189..14744443 | 57..311 | 100 | -> | Plus |
| 3L | 14744531..14745187 | 312..966 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:52 Download gff for
UFO06137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14729188..14729235 | 9..56 | 100 | -> | Plus |
| arm_3L | 14737289..14737543 | 57..311 | 100 | -> | Plus |
| arm_3L | 14737631..14738287 | 312..966 | 99 | == | Plus |
