UFO06139.5prime Sequence
1132 bp (1045 high quality bases) assembled on 2009-08-08
> UFO06139.5prime
CAGTCGACATGGTGATTGAGAAGATCATTGGTGACCTGGAGTCCAACATG
ACGCTGGAGAACGAGGAGGCCAAGCGCAAGCTTGTGGAGTTGCTATCCCA
GAACAAGGAGCAGTGGGTGGTAAAGTTCATGCTGGACTACTTCTTTACAA
CTGGATCTCAGCGCATTTTGGAGGTACTGGTCAAAGCCCAGGCACCTCAC
GATGGGTACATCTTTGACAAGCTGGACGACTGCCTAAAGCAGTCGCAGCA
CCGAGTGCAGAGCCTCCAGGTGTTCTGCTTCATTGTGCGCCATCACCCTA
CTTGGCTGTACAAGATCGAGAAACACCGGCTGATCAAAAGTGTTTTTAAG
CTTATGACGCACGAGAAGGAGATAGTTCCGCTGATGAGCGCCCTGTTGTG
CATAATTACTCTGCTGCCGATCATACCGAATTCTGTGCCCAACTTTCTTA
ACGATCTGTTTGAGGTGTTCGGGCATTTGGCCTCGTGGAAGCTGCAGAAT
AGCAATAAACTGCCGGACGAGAAGCTCGTCCACCTGCAGTTGGGTCTACA
GATGCTATTTCACCGCCTGTACGGCATGTATCCGTGCAGCTTTATTGCCT
ATTTAGTGGAGTTCATCAAGCGAGGCAACGGCGGGGGCATCTTCCAGCAT
ACAATCAAGCCGCTGTTGAACACTGTGCGAGTGCATCCCATGCTGGTGAC
GGCCACGCCAGAGACTGAGGTAAACAATACGCGATGGAAGGAGATGGAGC
CGCATGACGTGGTTATGGAGTGCGCCAACCTATCGCTGCCCGTCCTCTTG
CCCGAGACGAGCAACGAAGACGGCAGCTATGCGTATCCCATGACGCCAGG
ATACAGTCGCATGACTTCAATACCTCGAATACGGACTACAGCTATCAGCT
GAGGGAGTTTCAGCAATCGAGAAATGTCTACACCCGCTTCGATTCGTTTG
CCTCGGGTGATGATGTGGGTCCGATCTGGAGTCCGCATACGAGATGCCAC
GACCAGTAGCGGCATACCGCTTACACCCACCACATCGTTTATTTGCACTA
ACACGGCTATGAACTCTCAGCTTATGTGCATGACTGTCTCACGCCGGAGC
ACTGTGGAGCCACGACACCCTTAGGATAGATC
UFO06139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsc1-RA | 3896 | CG6147-RA | 268..1359 | 8..1090 | 5200 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24131137..24131860 | 359..1076 | 3310 | 98.8 | Plus |
| 3R | 32079331 | 3R | 24130820..24131076 | 103..359 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 24130665..24130759 | 8..102 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:32:35 has no hits.
UFO06139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:21 Download gff for
UFO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsc1-RA | 258..1356 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:28 Download gff for
UFO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsc1-RA | 261..1359 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:48 Download gff for
UFO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsc1-RA | 261..1359 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:48 Download gff for
UFO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24130820..24131076 | 103..359 | 100 | -> | Plus |
| 3R | 24130658..24130759 | 1..102 | 97 | -> | Plus |
| 3R | 24131138..24131877 | 360..1090 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:28 Download gff for
UFO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19956380..19956481 | 1..102 | 97 | -> | Plus |
| arm_3R | 19956542..19956798 | 103..359 | 100 | -> | Plus |
| arm_3R | 19956860..19957599 | 360..1090 | 98 | | Plus |
