UFO06142.5prime Sequence
1105 bp (1007 high quality bases) assembled on 2009-08-08
> UFO06142.5prime
CAGTCGACATGAATGACATATTCACCAACTGCAAGTTGAAGAACGGTTTT
GGACCGAGCGTACAAGCGACAGCCGCAGCCACATCGCCCACGAAACGACC
CCTCAGCCCCGACCACCCAAACCCAGCGCTGCCCATCACCGAGACACCGA
GTCCTGCTATGAACCGCATGGGCTGGGCCCTACGCACACTACTCGTCGCC
GACAACTCGAGCTGTCTGAAGGATCGCAAGGTCTCCGGCAAGCTAATCCG
TAAGTGCGCCCCCGGCACCGAGCTCGTCGACTGGCTGGTCAACCTCTCGC
CCATCGTCCACACCCGAGCCCAGGCGGCTGGCATGTGGCAAGCGCTCCTC
GAGGAAGGAGTACTCGCACACGTCAACAAAGAGCAGCCCTTCAAGGACAA
GTGCTTCCTCTACCGCTTTCGCATCGACGAGGAGGGCGGCACGGCGGCAG
CGGGCGTGCCCCAGGCGGAGGACCTCGGAGCGGCCAACGAGCACATCCGC
GAGGCGCTCAGCGCACTCTTCCAGCGCGGACCGGACGCCACACTGCGTAT
GATATTGCGCAAACCTTCTCACGAACGGACATCGGAGGAGCTGGAGCTGG
TCTTCGAGGAACTGGTCCACATTGCCGCACTCTCCCACTTGTCGACCAGC
ATAAAGCGGGAACTGTCGTCGATTTTCGTGTTCGAGGCTCATGCCCAGGC
GGGAACAATATTATTCAATCAAGGCGACGAAGGACGCTCCTGGTACATCT
TACTCAAGGGATCGGTAGACGTTGTGATACACGGCAAGGGAACTGTTGCC
ACTCTGAAGACTGGGGATGATTTCGGGAAACTGGCCTTGATAAACGACGC
ACCCAGAGCTGCTACCATCGTACTGAAGGAGACAATTGCCACTTGCTGCG
CGTGACAAGGAACACTTCAACCGGATACTGCGCGATGTGGAGGCATACTC
TGAGATTGCAGGAGCACGGCAAGGATGTTTTTATGCTCGAGCGCGTGCTA
GCAACGTGACAGCATTCTGCATTTAATTATACGTGATGTCGGGACTCCCG
CCAGATGCTGACACTGCTGAACGGACTGGGCAGTCTGGGGGATGATCGTC
TGACG
UFO06142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Epac-RG | 3662 | CG34392-RG | 343..1404 | 9..1060 | 4995 | 98.6 | Plus |
| Epac-RF | 4043 | CG34392-RF | 724..1785 | 9..1060 | 4995 | 98.6 | Plus |
| Epac-RE | 6597 | CG34392-RE | 1080..2141 | 9..1060 | 4995 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6768122..6768315 | 565..372 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 6767415..6767560 | 711..566 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 6767051..6767195 | 856..712 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 6768369..6768512 | 372..229 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 6765967..6766114 | 997..854 | 545 | 95.9 | Minus |
| 2R | 25286936 | 2R | 6768926..6769024 | 143..45 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 6768577..6768667 | 232..142 | 455 | 100 | Minus |
| 2R | 25286936 | 2R | 6769306..6769344 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:50 has no hits.
UFO06142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:47 Download gff for
UFO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Epac-RD | 702..1775 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:57 Download gff for
UFO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Epac-RE | 1074..2147 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:14 Download gff for
UFO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Epac-RE | 1074..2147 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:14 Download gff for
UFO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6768579..6768665 | 144..230 | 100 | <- | Minus |
| 2R | 6768926..6769023 | 46..143 | 100 | <- | Minus |
| 2R | 6769308..6769349 | 1..45 | 91 | | Minus |
| 2R | 6765935..6766111 | 857..1026 | 94 | <- | Minus |
| 2R | 6767051..6767195 | 712..856 | 100 | <- | Minus |
| 2R | 6767415..6767560 | 566..711 | 100 | <- | Minus |
| 2R | 6768122..6768314 | 373..565 | 100 | <- | Minus |
| 2R | 6768369..6768510 | 231..372 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:57 Download gff for
UFO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2653440..2653616 | 857..1026 | 94 | <- | Minus |
| arm_2R | 2654556..2654700 | 712..856 | 100 | <- | Minus |
| arm_2R | 2654920..2655065 | 566..711 | 100 | <- | Minus |
| arm_2R | 2655627..2655819 | 373..565 | 100 | <- | Minus |
| arm_2R | 2655874..2656015 | 231..372 | 100 | <- | Minus |
| arm_2R | 2656084..2656170 | 144..230 | 100 | <- | Minus |
| arm_2R | 2656431..2656528 | 46..143 | 100 | <- | Minus |
| arm_2R | 2656813..2656854 | 1..45 | 91 | | Minus |
