UFO06143.5prime Sequence
1101 bp (987 high quality bases) assembled on 2009-08-08
> UFO06143.5prime
CAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGCTCTTCTAC
CTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAGCAGTCCGG
CAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCATCGGCCTCT
TCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCGGCTACATC
AACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGGTGCCAGGC
TCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTTCTTTGCCA
ATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGTTGCAGGAT
TCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCTCTATGCGG
TGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGCCACTCTAT
CGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGTCCTCCTGC
ATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTGGCGTATAC
GGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGATGTGCATTC
CCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACCTGGAGGTG
GATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTACATAGACTA
CGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTACTTCCAGC
GGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGTCCTATGTT
GCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTCATCGGAGC
GATTGCCAAGGCTACACCTTGAACGAGACAGATTACAGGACCCTATCCTC
TGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGCTGCAGTACCTC
ACGCCTGACTTCGTGTCCTTCTTTGGATGGGCGCTGTTCCGCGCCGTGAT
GTCCTCCGCCGACTCCTCGGTGCTCTCCGCCGCCTCCATGTTCGCTCGGA
ACGTGTACAATTGATTCGTCGAGCATCGAAATGAAACATTTGGGTGATGC
G
UFO06143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7708-RB | 4748 | CG7708-RB | 827..1891 | 9..1066 | 5145 | 99.2 | Plus |
| CG7708-RA | 3299 | CG7708-RA | 827..1891 | 9..1066 | 5145 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18682788..18683373 | 282..867 | 2930 | 100 | Plus |
| 3R | 32079331 | 3R | 18682440..18682715 | 9..284 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 18683508..18683702 | 871..1060 | 750 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:16 has no hits.
UFO06143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:46 Download gff for
UFO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7708-RB | 1301..2372 | 2..1066 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:23 Download gff for
UFO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7708-RA | 822..1893 | 2..1066 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:36 Download gff for
UFO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7708-RA | 824..1895 | 2..1066 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:36 Download gff for
UFO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18682437..18682713 | 2..282 | 98 | -> | Plus |
| 3R | 18682789..18683373 | 283..867 | 100 | -> | Plus |
| 3R | 18683504..18683713 | 868..1066 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:23 Download gff for
UFO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14508159..14508435 | 2..282 | 98 | -> | Plus |
| arm_3R | 14508511..14509095 | 283..867 | 100 | -> | Plus |
| arm_3R | 14509226..14509435 | 868..1066 | 94 | -> | Plus |
