UFO06147.5prime Sequence
509 bp (32 high quality bases) assembled on 2009-08-08
> UFO06147.5prime
CAATCCACATGGAGTTACTGCTGCTGTTTATGCTAGCACTTCAGCTTATA
GAATCCATCATCGGAAGTAAAAATGTACCAATTCACCGGGTTGAATCTAT
ATTTGGCGAAAATATTTATCTTCCTTGGAATGTAACAACTTATGATGGAG
ATGAAGCTGTGCTGGTTCTGTGGTACCGAGATGATAAGGGTACTCCAATT
TACAGCATTGACATTCGAGCTGGAGTATCCAAGCACCGAAAAGATGGTCG
GACGACTCCGTATTTGGGGATAGAGCATATTTTATCTTTGACAAGGATCC
GGGAAAACTGTCAATTCAGAATACGGTGGCATCCGACTCCGGAACTTATA
GATGTCGCGTGGACTTCCTGAGAGCGCAGACCATAAACAGCCGCATTAGG
CTCAATGTCATATCTCCACCCAAACAAGTTATTATTCGAGACAGCTCCAA
TGTTGAGCGTTCTGCAATTGTGGGACCATATAGCGAAGGCAACATCATAT
CCCTGAAAT
UFO06147.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12950-RB | 4429 | CG12950-RB | 658..1161 | 7..509 | 2195 | 95.8 | Plus |
| CG12950-RA | 3598 | CG12950-RA | 658..1161 | 7..509 | 2195 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9738520..9738730 | 413..204 | 930 | 97.2 | Minus |
| 3R | 32079331 | 3R | 9738821..9738951 | 205..75 | 535 | 93.9 | Minus |
| 3R | 32079331 | 3R | 9738294..9738389 | 509..414 | 420 | 95.8 | Minus |
| 3R | 32079331 | 3R | 9739254..9739322 | 75..7 | 300 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:16:27 has no hits.
UFO06147.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:14 Download gff for
UFO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12950-RA | 600..1111 | 1..509 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:00 Download gff for
UFO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12950-RA | 650..1161 | 1..509 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:28 Download gff for
UFO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12950-RA | 650..1161 | 1..509 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:28 Download gff for
UFO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9738821..9738950 | 76..205 | 93 | <- | Minus |
| 3R | 9738294..9738389 | 414..509 | 95 | <- | Minus |
| 3R | 9738520..9738728 | 206..413 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:00 Download gff for
UFO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5564016..5564111 | 414..509 | 95 | <- | Minus |
| arm_3R | 5564242..5564450 | 206..413 | 97 | <- | Minus |
| arm_3R | 5564543..5564672 | 76..205 | 93 | <- | Minus |
