UFO06148.5prime Sequence
1083 bp (989 high quality bases) assembled on 2009-08-08
> UFO06148.5prime
CAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTTGGTACACA
CCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTGGCCAAGGG
CGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCAGCGATATC
ACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAATTGGAAATA
TTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAAACCCATTT
GACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAACGAGAGCA
GCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGCGCGGCATA
CTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCGGGAACAAA
GCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAGTCGCGAAG
CTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAAAGAACTTC
GATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCCTTCGACAT
GGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCAAGTGGAGA
TTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCCTGCCAAGT
GCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTATGTGGCTGG
CGGAATGTTCACTGAAACGAGATATTCGACATAAAGCCGGAAGTGGTTTA
CATGAAGGATCTGCAGCTGAAGGATGAATTCTTCGAGAGGGCCAGCTTTC
GTCTCTTGGTGGCCTGTGTTCTGCTCACTGTCACTCTGATGTTTTGTGCT
CAACAACTGCATGCGACTAGTAAAATGCCATCTATTTCTGTGATCCTCTG
GATCGTGACTTGGCACCCGCGGAATCGGAAATATGGCGTGACTTACTCCC
TGCTCCAAATAGAGAGACTGCAGCGATATTGTACTTGCTGGATGTCCCGC
ATGGCAAATTTTGCGATTAGGAGAAATACTGCGAATGAATCCTGATGATG
CTGCTATTGTATGCCTATTCTGGTAATATGCTC
UFO06148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11353-RB | 3115 | CG11353-RB | 578..1622 | 8..1039 | 4840 | 98.4 | Plus |
| CG11353-RA | 2910 | CG11353-RA | 373..1417 | 8..1039 | 4840 | 98.4 | Plus |
| CG30471-RB | 2435 | CG30471-RB | 285..819 | 237..770 | 550 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4536889..4537506 | 378..991 | 2845 | 98.9 | Plus |
| 3L | 28110227 | 3L | 4535993..4536363 | 8..378 | 1855 | 100 | Plus |
| 2R | 25286936 | 2R | 15535596..15535983 | 384..770 | 330 | 72.9 | Plus |
| 2R | 25286936 | 2R | 15535384..15535525 | 237..378 | 200 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:28 has no hits.
UFO06148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:17 Download gff for
UFO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11353-RB | 563..1626 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:14 Download gff for
UFO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11353-RA | 367..1430 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:40 Download gff for
UFO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11353-RA | 367..1430 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:40 Download gff for
UFO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4535987..4536363 | 1..378 | 98 | -> | Plus |
| 3L | 4536890..4537576 | 379..1048 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:14 Download gff for
UFO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4535987..4536363 | 1..378 | 98 | -> | Plus |
| arm_3L | 4536890..4537576 | 379..1048 | 96 | | Plus |
