UFO06149.5prime Sequence
1074 bp (959 high quality bases) assembled on 2009-08-08
> UFO06149.5prime
CAGTCGACATGGAAACCACAATCAATAACAACAACAATGACAACGGATAT
ATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATCTCAATACC
AGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGACGCTCTCTG
AAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCCCGTCTGGA
GTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAACAACGACAT
CGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGGCAATGTGT
GGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGTTCGTGATA
CCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTACTACTTGGA
AATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGTCTACGACT
TTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGGCCACGGGC
ATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTACGCTACTT
CGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCGCGAGGAGT
GGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCAGAGCCACC
AGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTCTATTTCAC
GAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCATCGGATATC
CCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGTATCGTCATCGCG
GGGATTATGTTCAAGGGTGTGAAGAGTTCGGGCAAGGCCTCCTACTTCCT
CGCCCTCTTTCCCTACGTGGTGATGCTGGTGCTCTTGGTGCGGCACTCAC
TTGCCGGGCGCTTTCGACGGCGTGCTGTACTTCTGCGCGCATGCACAAGC
TCTGGAACGCAGTCTGTACGCGCGTCACCCAGTGTTCTTCTCACTGCATC
TGCTCGGAACATCATCATGTACGCCTCGTACACGCTCCGCAAACATTAAG
AATGCATTCCTGACCACGCTGACC
UFO06149.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1698-RB | 2246 | CG1698-RB | 248..1291 | 7..1032 | 4745 | 98 | Plus |
| CG1698-RA | 4106 | CG1698-RA | 2108..3151 | 7..1032 | 4745 | 98 | Plus |
| CG4476-RB | 2400 | CG4476-RB | 521..874 | 252..605 | 480 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9795433..9795895 | 7..469 | 2315 | 100 | Plus |
| 2R | 25286936 | 2R | 9796296..9796530 | 467..701 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 9796585..9796819 | 701..933 | 1030 | 97.9 | Plus |
| 3L | 28110227 | 3L | 9212984..9213201 | 252..469 | 475 | 81.2 | Plus |
| 2L | 23513712 | 2L | 14848711..14848890 | 431..252 | 240 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:44 has no hits.
UFO06149.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:43 Download gff for
UFO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1698-RA | 2083..3143 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:48 Download gff for
UFO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1698-RA | 2100..3160 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:56 Download gff for
UFO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1698-RA | 2100..3160 | 1..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:56 Download gff for
UFO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9795425..9795894 | 1..468 | 99 | -> | Plus |
| 2R | 9796298..9796529 | 469..700 | 100 | -> | Plus |
| 2R | 9796585..9796943 | 701..1039 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:48 Download gff for
UFO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5682930..5683399 | 1..468 | 99 | -> | Plus |
| arm_2R | 5683803..5684034 | 469..700 | 100 | -> | Plus |
| arm_2R | 5684090..5684448 | 701..1039 | 93 | | Plus |
