UFO06152.5prime Sequence
1109 bp (1013 high quality bases) assembled on 2009-08-08
> UFO06152.5prime
CAGTCGACATGCGCGCAGAGCGATCAAAGTCGCTGGATCGTGAGGAGCGT
GGAGCACGCGGGCAGGATCGTGATCGAGGCAAAGATCAGGATCGAGACCG
CAGCCGTAACAATTTCGGTTGGTCAAAGAAGCAGGCACCGCCTACATCGC
GTAGTGGTCGCATTGTCAAAGGACGCGGAGTGTTTCGCTTTCGCACCCCG
TCGCGTAGTCGTTCGCGCAGCACTACGCCACCTCACTGGAAGCATGCCCA
GAAGCGCACCATCAAGTTGTCCGACTTGGAGCGCATTGAGGAGGAGAGCA
AGATGCGCGAGGAGGAGATGAAGCGGCGCGAGCATGAGAGAAAGCGTCGC
CACGAGGAGGCCACAAAGAATCCTAAGCAGTCCTTTTTCGAGCTATCCCA
TGCCAGCACTTACGGTGGCAAAATAACTCCGGATCGATTCTCTCCAGAGC
ACAAAGCCAAGTCGAAGGACACCGCAGACCGCGGTAAAGCCAAGGAGAGA
GAAAAGGCTGGCGAGAAGGATAAGGCTAGGGATGTGACTCCTGTAAAACG
CCGCAAGTCGATGGACATGAACGCCTTGGACTACGAGCAGCAGACAGAAT
CCGAAGTCGAGTCCGAGGACGAGGAGCAGTTGAAGGTGAAACCACCAAGC
AAGCAGGATATCAGAGTGGAGCCATCGACCAGCAAGGATCGCAACGCGAA
ACGCGATGAGCGCAAGCCCACCGAGGAGAAGGCCAAGCCAAAGCGCAGCC
GTTCCCGGAGCCCTCGTCGCCAATCTCCTGCTCGTCGTCAGCAACGCTCG
CCTGCCCGACGTCCTGGCCAAACTACAACCAAAACCAGAATCAGAATCAA
ATCAGAATCAGAATCAGATCAGCTTAATCGTGGCAATCGCCGAAATCCCT
TCGCGGACAGAGATCGCCGCCGTCGCTCGCGCTCTCAGGATATGAGTACC
GCAATCGTTACCCCCTGTCACATCAGAGGAGAGGCTCGCCCAGTGGAGAC
CGCCGGCGTCAGCAGCGCCTCCCGCAGTCAGACGTAGCAGATCACCCAGC
AGAGGGCGTCAGTTGTCGCCGGGCGAAACGTCAGATCGGCGAGTAGACGT
CCATTCACG
UFO06152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RC | 3893 | CG1866-RC | 1682..2770 | 9..1084 | 5050 | 98.4 | Plus |
| Moca-cyp-RB | 3726 | CG1866-RB | 1515..2603 | 9..1084 | 5050 | 98.4 | Plus |
| Moca-cyp-RA | 3168 | CG1866-RA | 957..2045 | 9..1084 | 5050 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28343135..28343987 | 186..1032 | 3905 | 99.1 | Plus |
| 3R | 32079331 | 3R | 28342898..28343074 | 9..185 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:56:32 has no hits.
UFO06152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:41 Download gff for
UFO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RC | 1064..2165 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:21 Download gff for
UFO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..2058 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:20 Download gff for
UFO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..2058 | 9..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:20 Download gff for
UFO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28342898..28343074 | 9..185 | 100 | -> | Plus |
| 3R | 28343135..28344059 | 186..1095 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:21 Download gff for
UFO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24168620..24168796 | 9..185 | 100 | -> | Plus |
| arm_3R | 24168857..24169781 | 186..1095 | 97 | | Plus |
