UFO06154.5prime Sequence
1105 bp (1012 high quality bases) assembled on 2009-08-08
> UFO06154.5prime
CAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGATCCTGCTC
CTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAACATTTTCAT
CAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGACCTGTTCT
ATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCACCGTCCCA
GTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGTCTGATTGC
CTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGACCAGGAGG
CACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGGTGCCACAG
GAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAATGCGAGCCT
ACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCCTCGATTCA
ACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCAAAGGCATC
TCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCCTCCCAAGG
ACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGTTTTGGCCG
TGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAACAGCTTCGC
CAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGCAGCCACCA
AAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAGTGCCACGG
GATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGGACAGCAAA
AAGTCGTGCAGCATATTCGACCGTTTCCGGAGCTCACCCACCCCCACGCC
GTATGCCACCGCCCTGCTGCCCATGAACCTTGAACAGACCGCAGAGACGA
TTTACTCGAAGCCAGAGTCGATCTGTCCCTCGAGGATTTCCTACTACGCT
CTCGCACTGACCCAGCCTTGCAGCCTATCGACGCGAGAGCATCCGAGCAC
GGCATGGCACTGCACAGCGAGTGCAGCTAGCTTTTGGAGGCATCCCACCG
CAGAACATCACCATGGCAGTCACGGGGGGAATGTACACGGCGTGCACGAT
ACCAC
UFO06154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drl-2-RC | 6020 | CG3915-RC | 1209..2303 | 8..1081 | 4940 | 97.9 | Plus |
| Drl-2-RB | 4688 | CG3915-RB | 1209..2303 | 8..1081 | 4940 | 97.9 | Plus |
| CG13325-RB | 3610 | CG13325-RB | 753..874 | 8..129 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13067809..13068047 | 496..258 | 1195 | 100 | Minus |
| 2R | 25286936 | 2R | 13067573..13067743 | 664..494 | 855 | 100 | Minus |
| 2R | 25286936 | 2R | 13067352..13067511 | 824..665 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 13068109..13068237 | 257..129 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 13067151..13067277 | 949..823 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 13072577..13072699 | 130..8 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 13111521..13111643 | 8..130 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 13116412..13116481 | 880..949 | 305 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:16 has no hits.
UFO06154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:40 Download gff for
UFO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drl-2-RB | 1199..2187 | 1..984 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:51 Download gff for
UFO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drl-2-RB | 1200..2188 | 1..984 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:29 Download gff for
UFO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drl-2-RB | 1200..2188 | 1..984 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:29 Download gff for
UFO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13068109..13068236 | 130..257 | 100 | <- | Minus |
| 2R | 13072578..13072702 | 1..129 | 96 | | Minus |
| 2R | 13059393..13059411 | 966..984 | 100 | <- | Minus |
| 2R | 13067132..13067277 | 823..965 | 97 | <- | Minus |
| 2R | 13067354..13067511 | 665..822 | 100 | <- | Minus |
| 2R | 13067573..13067741 | 496..664 | 100 | <- | Minus |
| 2R | 13067810..13068047 | 258..495 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:51 Download gff for
UFO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8955614..8955741 | 130..257 | 100 | <- | Minus |
| arm_2R | 8960083..8960207 | 1..129 | 96 | | Minus |
| arm_2R | 8946898..8946916 | 966..984 | 100 | <- | Minus |
| arm_2R | 8954637..8954782 | 823..965 | 97 | <- | Minus |
| arm_2R | 8954859..8955016 | 665..822 | 100 | <- | Minus |
| arm_2R | 8955078..8955246 | 496..664 | 100 | <- | Minus |
| arm_2R | 8955315..8955552 | 258..495 | 100 | <- | Minus |
