UFO06156.5prime Sequence
1127 bp (1026 high quality bases) assembled on 2009-08-08
> UFO06156.5prime
CAGTCGACATGAGTAAACAAGGGAATAAAAGCAAGGATTCGGCTGCCGCA
TCCGCCACTTTAAAACGGATAAGCGAAAAGAAGTTGGAGGCCTTCACGGT
GGGCACCTTCTCCAAACGACAATTGTCCAAAAAAGAGCTCGAGGACCAGA
AAAAAAAGGAGGATGCAGCTGCTGCGGCACATGCCTTCAAAGAGTTCGTA
GAGACTTTCCAAGATGCACCCACCCCCTCCTCGAAAGTTTGGGTCAAAGC
CGGCACCTATGATGCAGGATCCCGGCGGGAGGACAAGTCGGAGAAGGGCA
AGCTATACAAGCCGGTCTCCAAGCTGATGGAAAAGAGCTCCTCGGACAAG
GTCGAGGATTACGCCAAGACCCTGGCCTCGGATCTCAAAAAGGACTCGGG
TCCATTGAAGAAGAAAAACCAGGAGAAGAAAAAGAGCAACTTGGAGCTGT
TCAAGGAGGAATTGAGACAGATTCAAGAGGAGCGTGAGGAGCGCCACAAG
TACAAGCACATGGCCTCAAGCCATTCCGCACCAGCACAGCAACCGGCTGC
ATCAGCTGCTCCTGTGCCCAGCAGCAGTGTCTCCACCACCTCCCAGAACT
CAAGCAGCTCAAAGGAGTCTGGTTCGTTTGACACGGGCGATCCAAATACC
ACAAACCTGTACCTGGGCAACCTGAACCCCAAGATATCCGAGCAGCAGCT
TATGGAAATCTTTGGGCGATACGGTCCCTTGGCCAGTATCAAGATCATGT
GGCCCCGCTCCGAAGAGGAGAAGCAAAGGGGACGCAATTGCGGCTTTGTG
GCCTACATGAGCCGCAAGGATGCGGAAAGGGCCCTAAAGACACTGAACGG
GCGCTACATCATGGGCTACGAGATGCGTCTAGGATGGGGAAAGACTGTGC
CCATAATGAATACGCCCATTTTTACACCGCAAGCATTGCTTGAGATGACC
CTGCCTCCGCCTCCCTTCAGATTGCCCTTCAATGCCCAACCTCCACCCAG
TGGAGCTGATGTGCTGCCCAGAAAAACTACAGGAGTTCATCAGAAGACAA
GAAGAAATATGGAGCGAACTTGCCATGCGTCGTTAAGTCCTATCCACAGA
AGCTGTTCTTATGTTATCCATCGATGA
UFO06156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9346-RA | 2998 | CG9346-RA | 77..1206 | 9..1123 | 5150 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21012679..21013098 | 470..889 | 2100 | 100 | Plus |
| 2R | 25286936 | 2R | 21012335..21012622 | 183..470 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 21013157..21013301 | 888..1031 | 600 | 95.9 | Plus |
| 2R | 25286936 | 2R | 21012162..21012279 | 66..183 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 21012046..21012102 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:26 has no hits.
UFO06156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:39 Download gff for
UFO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9346-RA | 75..1208 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:00 Download gff for
UFO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9346-RA | 77..1210 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:10 Download gff for
UFO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9346-RA | 77..1210 | 9..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:10 Download gff for
UFO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21012046..21012102 | 9..65 | 100 | -> | Plus |
| 2R | 21012162..21012278 | 66..182 | 100 | -> | Plus |
| 2R | 21012335..21012621 | 183..469 | 100 | -> | Plus |
| 2R | 21012679..21013097 | 470..888 | 100 | -> | Plus |
| 2R | 21013158..21013289 | 889..1020 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:00 Download gff for
UFO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16899551..16899607 | 9..65 | 100 | -> | Plus |
| arm_2R | 16899667..16899783 | 66..182 | 100 | -> | Plus |
| arm_2R | 16899840..16900126 | 183..469 | 100 | -> | Plus |
| arm_2R | 16900184..16900602 | 470..888 | 100 | -> | Plus |
| arm_2R | 16900663..16900794 | 889..1020 | 97 | == | Plus |
