UFO06158.5prime Sequence
1116 bp (1002 high quality bases) assembled on 2009-08-08
> UFO06158.5prime
CAGTCGACATGTTGTATAATGTGCCGTGCTATCAAAACTTCTCAACGCTG
GATTACTACAAAGTTAAACGTCCCAAGACAGACCACACGGATACACATGA
ACGCAACCGCCTCTGCAATCTGTCACAGCAGCAGCAGCAACAGCAACCCC
AGCAGCAACAGACGCATCAGCAGCAACAACAGCAGCAGCAGCAATCCCAT
CAGCAATCCCATTCCAGCACCGTGTTGGCCAGCAATGGACCCAGTAGCGC
CGGTGCCGGCATGGGTGTCGGTGTGGGCGGAGGCGGTGGCAGTGGAGGAG
GAGTAGGAGGCGGAGTTGGCCAGTGCAGTCCGCTGGGACTGCCGCCGCAG
AGCCAGCCGCTCCAGCCGACAATAGGATCGCTGGCCTCGCTGAGCGGTCA
CTACTCGAACGGTAATGCCAATCCGAATGTGAACTCGAGCAGCTGCAGTC
TGGCCACAGCATCCAGTTTTGCGCAGTCCGCCGGCAGCAGTTTCTCCACA
TATCAACAGGCTGGTGGCACCAGCGGTGGAGTTTCTGGCGAGGATGGCGT
GGTGGGCGGAGCAACTGTGATGTCGCACTGGACGCACGATGGCACTGGCT
CGAGTGCAGCGGTCAAGTCGGAGTCCCGCAGCCCGGGCCAAGTGCACGCA
TCGCTGGACAACGGCTCGGTGGCCGGATCCAATTTGTACGGCTGCAGCTC
GGCCAGCAATCCGCTGGACGGAGGAGCAGTGGCGGTCAACTCTTCGGCAG
TGGCAGCGGCAGCAGCAGCGGTCTACGACGGCAAACATGACTACTACTAC
TACAACAGCATGCAGCAGTACACGCCGCCGCCCTTCTACTCCGGATACGG
AACTCCTTATGCGGCGGCAACGGCGGCACGGCAGGCCAAGATGGAACCCG
GAGCGGCAGCTGCGGCGGCTGCCTACTTGACGCCCAGCTATGCCGCCAGC
GGCAACAACAACTCGCAGCTGTACAGCAGTCCGTACGCCGGCTACAACAA
CTTCGGCAGCAGACTACGGCGGCTACTACAACGAAGCAGTACGCCAACTA
TTACAGTCCGGCCAACTACCCAACGGTATGCGGTCAGCTTCCCCAGCCTC
GGAGTGCGAAGATCAT
UFO06158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eya-RB | 3320 | CG9554-RB | 475..1573 | 9..1109 | 5290 | 99 | Plus |
| eya-RA | 3075 | CG9554-RA | 284..1328 | 63..1109 | 5020 | 99 | Plus |
| eya-RC | 2832 | CG9554-RC | 87..1085 | 109..1109 | 4790 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6529342..6530330 | 1097..109 | 4680 | 99.1 | Minus |
| 2L | 23513712 | 2L | 6546447..6546502 | 64..9 | 280 | 100 | Minus |
| 2L | 23513712 | 2L | 6532906..6532952 | 109..63 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6609..6645 | 992..1027 | 119 | 83.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8065..8101 | 992..1027 | 119 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2442 | 805..1010 | 111 | 58.2 | Plus |
UFO06158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:45 Download gff for
UFO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 471..1569 | 9..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:08 Download gff for
UFO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 475..1573 | 9..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:47 Download gff for
UFO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 475..1573 | 9..1109 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:47 Download gff for
UFO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6529327..6530329 | 110..1116 | 98 | <- | Minus |
| 2L | 6532906..6532952 | 63..109 | 100 | <- | Minus |
| 2L | 6546449..6546502 | 9..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:08 Download gff for
UFO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6529327..6530329 | 110..1116 | 98 | <- | Minus |
| arm_2L | 6532906..6532952 | 63..109 | 100 | <- | Minus |
| arm_2L | 6546449..6546502 | 9..62 | 100 | | Minus |
