UFO06159.5prime Sequence
1113 bp (989 high quality bases) assembled on 2009-08-08
> UFO06159.5prime
CAGTCGACATGCGAGAGAAGGAAAGGGTTCAGAACACGCCCCCACTAACC
AAGCAGCCGCGAAAGAGACGAATAGCCCCACAACCTCCACCGAAACCCCC
ACCAAAACCGAGAAAAATTCGTACTGAGAAAACCACCAACGATGACCACT
GTGCGTTCATTGAGCAGCTCTTTTTCGAAACAACTGAGGCAAAACCATCG
GCTACAGTGGTTGCGGGAGTCACAGGACCTGCAGGACCTTTGGGGGCTAC
AACATCCTCGCCGTCGCTGGAAACGCAATCAACTGTTATAATTTCGTTTA
AATCATCTCAAACACCTGTGCAGTCTCAAACGAATTCTGCAGCCTCCGAA
AATGTTGAGGATGACACAGCGCCCCTGCCACTTCCACCGCCGCCCCCCGG
CTTCGGTACGCCCACCACGCCCCTTTTGTCAAGCAATGTGCTGAAGAAGG
TCGCCAGCTTCACGGTCGAGAAGTCTTCGGCGGGCAATAATAGCTCGAAT
CCTCCGAATTTGTGCCCCACCAGTGACGAGACCACCCTCTTGGCCACACC
ATGTTCTTCATCGCTGACGGTGGCAACCCTGCCGCCCGAAATCGCCGTGG
GCGCAGCGGCGGGGGGCGTGGCCGGGGGTGCTGGTTCGCGACGCGGCTCA
TCTTATGTACCGGAAAAGTTAAGCTTCGCTGCATATGAAAAGTTCGAAGG
TCAAATGCTAATAAAATGGCTAATCTCAACGATGCAAAGCAATCCGAAGA
GTTCCAGCGGTGATGCTAATCAGGATTTATTTAATACACTGGCGTTGCAG
TTCTGCAATAATCTCAAATATGTCGGCGTCCTTAAGCAGATCTCCAATGA
GCACTTGGATTGCGGATTTAGCCCCTATGAAATGTACCAATGGACGCCAC
ACGGAGCAGCCAACCACCTCATTGCCCCTGACCCCTGGCAAGCTGGACAG
GTTGGCGGCTTGGCCATTTTCCAGCACACCATCCGGTATTCCAGCGCCTG
GATTCCGCATCGCTGGCGTCCTTGGGAGCAGGTGTGGGTGTGGCGGGTTC
TTGGCAACCATTGCCACCGCATCCAAGCCTCATCGGACAATCAGAAGCTG
CACGGATCCTCAG
UFO06159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| capu-RH | 3713 | CG3399-RH | 394..1478 | 9..1096 | 5210 | 98.9 | Plus |
| capu-RB | 3629 | CG3399-RB | 310..1394 | 9..1096 | 5210 | 98.9 | Plus |
| capu-RD | 4305 | CG3399-RD | 986..2070 | 9..1096 | 5210 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3884034..3884524 | 701..211 | 2440 | 99.8 | Minus |
| 2L | 23513712 | 2L | 3889430..3889638 | 217..9 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 3878895..3879069 | 872..698 | 860 | 99.4 | Minus |
| 2L | 23513712 | 2L | 3875082..3875302 | 1096..873 | 775 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:34 has no hits.
UFO06159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:44 Download gff for
UFO06159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capu-RB | 310..1403 | 9..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:47 Download gff for
UFO06159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capu-RD | 986..2079 | 9..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:39 Download gff for
UFO06159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capu-RD | 986..2079 | 9..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:39 Download gff for
UFO06159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3889431..3889638 | 9..216 | 100 | | Minus |
| 2L | 3875073..3875302 | 873..1102 | 93 | <- | Minus |
| 2L | 3878895..3879067 | 700..872 | 99 | <- | Minus |
| 2L | 3884036..3884518 | 217..699 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:47 Download gff for
UFO06159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3875073..3875302 | 873..1102 | 93 | <- | Minus |
| arm_2L | 3878895..3879067 | 700..872 | 99 | <- | Minus |
| arm_2L | 3884036..3884518 | 217..699 | 100 | <- | Minus |
| arm_2L | 3889431..3889638 | 9..216 | 100 | | Minus |
