UFO06160.5prime Sequence
1072 bp (984 high quality bases) assembled on 2009-08-08
> UFO06160.5prime
CAGTCGACATGAATTGGGCTATCTATCTTTTGTTGGCCCTGATCTCGCTG
GGCAGAGCAACACCTGTTCCCAATCGCCAGTATAGCTGTATGAGCTACCA
GGAGGACGACAACTCATTTCACGATGATGATGGCGATCAGGACTCTAGTG
GCGAGCTGCAGGAGCAGCAGGTGGAGTCCACTCCGATTCCGAGCGAGCCA
CATAGACGCACCTGCCCAGATGGCTACACTTTCTGTTTCACCATCTGGAA
CCAGACGGCCAATGGAGCGCGGGTTGTTAAACAGGGTTGCTGGAAGGACA
ACACGGATCGCACTTCCATTTGCAGCCAGTCGGAATGTACCAGCTCGGCT
CCCACCTCGAAGACCAGTTCTTTGTACTACTGTTGCTGTTCGGGAGGAGT
GTGCAATGCCCAATATTCCGTGGTCGAACCGGCACCTCTGGAACTGGGCT
CCAATGAGGGACGGACTTCGATCACAAATCGGGCGACAGAAAAACAGCAC
CAGTCCTTTTTGGCCAGTACAATGCTGGGCCTTGCCGGTGGACTCACAGC
CCTCACAATCGGCATCTTTCTGGCTGTTCAATATTGCCGCACGGCCAAGG
AGAAGCCGGAACCGGAGGAGTCGCCTCTGGCACCATCGGGCCCTGGCTAC
AGTTCTAATCTCAGGAATGTCGACAACATGAATTTGATCGGCATGCTGGG
GAGCGGCAAGTATGGAACTGTGATGAAGGGACTGCTCCACGATCAGGAGG
TGGCGGTTAAGATATATCCCGAAGAGCATCATCAGTACTATGTGAACGAG
AGGAACATCTATGCCTTGCCTTTGATGGAGTGTCCTGCGCTGTTGAGCTA
TTTCGGCTACGATGAACGCTGTACCATGGACGGCGATGGAGTATCACTGG
TACTATCACTGGCTCCCTCGGATGCCTCAGATGTGATAGCAATACCTAAC
TTTCAGCGATGCTGTGGATGCTGCGGTCATCACGCGTGAATCTCCGCACT
GCACACGTACTCGACTGGGAGAATCAGCATAGCCCTGGTGTTGGCTCATC
GGGATACCACACAAGATGGTGT
UFO06160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wit-RB | 4217 | CG10776-RB | 411..1486 | 6..1065 | 4780 | 97.6 | Plus |
| wit-RA | 4217 | CG10776-RA | 411..1486 | 6..1065 | 4780 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4067233..4067804 | 856..285 | 2860 | 100 | Minus |
| 3L | 28110227 | 3L | 4067862..4068088 | 287..61 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 4068159..4068213 | 60..6 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:41 has no hits.
UFO06160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:43 Download gff for
UFO06160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 405..1490 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:00 Download gff for
UFO06160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 409..1494 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:45 Download gff for
UFO06160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 409..1494 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:45 Download gff for
UFO06160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4067234..4067803 | 286..855 | 100 | <- | Minus |
| 3L | 4067864..4068088 | 61..285 | 100 | <- | Minus |
| 3L | 4068159..4068215 | 1..60 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:00 Download gff for
UFO06160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4067234..4067803 | 286..855 | 100 | <- | Minus |
| arm_3L | 4067864..4068088 | 61..285 | 100 | <- | Minus |
| arm_3L | 4068159..4068215 | 1..60 | 95 | | Minus |
