UFO06161.5prime Sequence
1100 bp (1001 high quality bases) assembled on 2009-08-08
> UFO06161.5prime
CAGTCGACATGGATCCCACCATTTCAGTGTCCAAGGGCTGTTTTGTCTAC
AAAAATGGCGCTACGAGAGCAGGGAAAAAGGCGGCCAGCAAACGGAAGCG
TCCTGCCGCAGAATCCAGTAGTCTTCTTGGCAAAGAGGTAGTGCAGCAGC
CCTTCTATGAGGAATATCGCAAGGCCTGGAATCAGATAAACGATCACATT
GCCGACCTGCAGCACCGCAGCTATGCCCGCACTCTGGAGCAACTGGTGGA
CTTTGTGGTGGGGCAGGCAGAGCGCGACACCCCGGACGAGGTGCTGCCCA
CCGCCGCCTTGCTAACGGGCATTAATCAGCCGGATCATCTCAGCCAGTTC
ACGGCACTTACCCAGCGACTCCATGCCCAACGTGCTGCAATGGTATGTGT
GCTGCAGTCCAGGGATTGCGCCACTCTCAAGGCGGCCGTTGAGACATTGG
TTTTCGGGCTCGTAGAAGATAATGCAGAAGTGGAGCAAATGGAAGACGAG
GACGAGGACGAGGATGGTGCCGAACGGGATCGCAAGCGGCTACGTCGCTC
GCAGTGCACCATGAAGCAGTTGAAGTCTTGGTACACGAACAATTTTGACT
CGGAACAGAAGCGCCGCCAGCTGGTCGTCATCCTTCCCGACTTTGAGTGC
TTTAACGCAAGCGTGCTGCAGGATCTTATTCTAATTTTGAGCGCTCACTG
CGGCTCGCTTCCATTCGTCCTGTCCTGGGAGTGGCCACGGCCATGACAGC
TGTCCATGGGACACTACCATACCACGTCAGCAGCAAGATTCGTCTAAGGT
GTTCCAGACTCAAGCTGCTCCCACGGGCCTTAATGAGTGCTGGATAAAGT
TCTGCTGTCGCCCAAGTACGCTTTCCACCTGTCGGGAAAGACATTCAAGT
TCTGACGCACATCTTCCTATACTACGACTTCTCATCCACGGCTTTATTCA
GGCTTCAGTACTGCTGATGAACACTTCTTTGGTGGATGCCTTTGCTCTTT
GCAAGACTAAGCAAGCATGGGACGCATAAGCAGCTGACCAGAGAATTGAC
ATCGAGCTCCATCGTCGTCGTACGTCAGCCGATCATGATGCAACGCTTAG
UFO06161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34315-RB | 3315 | CG34315-RB | 1022..2068 | 9..1039 | 4845 | 98.5 | Plus |
| lat-RB | 2423 | CG4088-RB | 130..1176 | 9..1039 | 4845 | 98.5 | Plus |
| lat-RA | 3315 | CG4088-RA | 1022..2068 | 9..1039 | 4845 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13204315..13205120 | 837..34 | 3930 | 99.8 | Minus |
| 2R | 25286936 | 2R | 13204081..13204255 | 1003..837 | 510 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:09 has no hits.
UFO06161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:35 Download gff for
UFO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34315-RB | 992..2052 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:22 Download gff for
UFO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 992..2052 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:32 Download gff for
UFO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 1017..2077 | 1..1046 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:32 Download gff for
UFO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13204031..13204255 | 838..1046 | 92 | <- | Minus |
| 2R | 13204315..13205118 | 36..837 | 99 | <- | Minus |
| 2R | 13205182..13205213 | 1..35 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:22 Download gff for
UFO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9091536..9091760 | 838..1046 | 92 | <- | Minus |
| arm_2R | 9091820..9092623 | 36..837 | 99 | <- | Minus |
| arm_2R | 9092687..9092718 | 1..35 | 91 | | Minus |
